Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG38577 | Sorghum | cytosol | 67.8 | 70.18 |
| Zm00001d033003_P001 | Maize | cytosol | 68.64 | 69.83 |
| Os03t0169900-01 | Rice | cytosol | 60.17 | 61.21 |
| Zm00001d014200_P001 | Maize | nucleus | 57.63 | 56.2 |
| GSMUA_Achr6P10580_001 | Banana | nucleus | 47.46 | 54.9 |
| VIT_07s0031g01630.t01 | Wine grape | nucleus | 43.22 | 52.04 |
| GSMUA_Achr10P... | Banana | nucleus | 55.08 | 50.78 |
| KRH53801 | Soybean | nucleus | 42.37 | 49.02 |
| Solyc04g011910.2.1 | Tomato | nucleus | 38.14 | 46.88 |
| Solyc04g051820.2.1 | Tomato | nucleus | 37.29 | 44.9 |
| KRH64143 | Soybean | cytosol, endoplasmic reticulum, nucleus | 36.44 | 43.0 |
| KRH43319 | Soybean | nucleus | 34.75 | 42.71 |
| Solyc05g051710.2.1 | Tomato | nucleus | 35.59 | 40.78 |
| PGSC0003DMT400077395 | Potato | nucleus | 36.44 | 40.57 |
| CDX69874 | Canola | nucleus | 38.14 | 40.18 |
| CDY21617 | Canola | nucleus | 38.14 | 39.82 |
| AT5G64850.1 | Thale cress | nucleus | 37.29 | 38.6 |
| PGSC0003DMT400042668 | Potato | nucleus | 33.05 | 38.24 |
| AT5G09960.1 | Thale cress | nucleus | 35.59 | 37.5 |
| CDX85786 | Canola | nucleus | 35.59 | 37.17 |
| CDX81261 | Canola | nucleus | 36.44 | 37.07 |
| CDY14517 | Canola | nucleus | 36.44 | 37.07 |
| CDY31298 | Canola | nucleus | 36.44 | 37.07 |
| CDY46828 | Canola | nucleus | 36.44 | 36.75 |
| Bra028607.1-P | Field mustard | nucleus | 34.75 | 36.28 |
| CDY40070 | Canola | nucleus | 34.75 | 36.28 |
| CDY08844 | Canola | nucleus | 35.59 | 36.21 |
| GSMUA_Achr3P21420_001 | Banana | nucleus | 43.22 | 34.46 |
| KRH59453 | Soybean | cytosol | 33.05 | 30.23 |
| Bra037798.1-P | Field mustard | nucleus | 35.59 | 29.79 |
| CDY18692 | Canola | nucleus | 34.75 | 29.08 |
| Bra024332.1-P | Field mustard | cytosol | 22.03 | 28.57 |
| Bra031897.1-P | Field mustard | cytosol | 36.44 | 28.1 |
| KRH15631 | Soybean | plastid | 33.9 | 23.12 |
| Bra009071.1-P | Field mustard | nucleus | 38.14 | 18.91 |
Protein Annotations
| EnsemblPlants:Os10t0405300-01 | EnsemblPlantsGene:Os10g0405300 | EntrezGene:4348580 | InterPro:TypeIII_avirulence_cleave | PANTHER:PTHR33882 | PANTHER:PTHR33882:SF1 |
| PFAM:PF05627 | ProteinID:ABB47569.2 | ProteinID:BAF26472.1 | ProteinID:BAT10768.1 | RefSeq:XP_015614330.1 | SEG:seg |
| UniParc:UPI0000DB3F90 | UniProt:Q338G4 | MapMan:35.2 | : | : | : |
Description
Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein. (Os10t0405300-01)
Coordinates
chr10:+:13833340..13836254
Molecular Weight (calculated)
13011.2 Da
IEP (calculated)
7.632
GRAVY (calculated)
-0.893
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MESRKEEEQH GGGGAVGWMT VPAFGEWDMK NGAVPDYSMD FSKIREMRKQ NKRELSRASL GGDDDLLAAQ QHKAAAPQPA PNASAAADDH RRPLHAAHDD
101: SPTGRKKFLS YFQCCIRA
101: SPTGRKKFLS YFQCCIRA
001: MEDDRKEKNT PWLSVPQFGD WDQKGGGTMP DYSMDFTKIR EMRKQNKRDP SRASLGNEEE LIKPPESATS TAELTTVQSE NQREFSPSHH HQPHSPSTRR
101: SMFSCFNCCV KA
101: SMFSCFNCCV KA
Arabidopsis Description
At5g09960 [Source:UniProtKB/TrEMBL;Acc:Q67XU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.