Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14517 | Canola | nucleus | 97.41 | 97.41 |
| CDX81261 | Canola | nucleus | 91.38 | 91.38 |
| CDY31298 | Canola | nucleus | 84.48 | 84.48 |
| CDY46828 | Canola | nucleus | 83.62 | 82.91 |
| AT5G64850.1 | Thale cress | nucleus | 81.03 | 82.46 |
| CDX69874 | Canola | nucleus | 71.55 | 74.11 |
| CDY21617 | Canola | nucleus | 71.55 | 73.45 |
| CDY40070 | Canola | nucleus | 68.97 | 70.8 |
| CDX85786 | Canola | nucleus | 68.1 | 69.91 |
| Solyc04g051820.2.1 | Tomato | nucleus | 55.17 | 65.31 |
| CDY18692 | Canola | nucleus | 77.59 | 63.83 |
| VIT_07s0031g01630.t01 | Wine grape | nucleus | 51.72 | 61.22 |
| KRH53801 | Soybean | nucleus | 53.45 | 60.78 |
| Solyc04g011910.2.1 | Tomato | nucleus | 49.14 | 59.38 |
| Solyc05g051710.2.1 | Tomato | nucleus | 52.59 | 59.22 |
| KRH43319 | Soybean | nucleus | 45.69 | 55.21 |
| KRH64143 | Soybean | cytosol, endoplasmic reticulum, nucleus | 47.41 | 55.0 |
| PGSC0003DMT400042668 | Potato | nucleus | 46.55 | 52.94 |
| PGSC0003DMT400077395 | Potato | nucleus | 48.28 | 52.83 |
| Bra024332.1-P | Field mustard | cytosol | 40.52 | 51.65 |
| HORVU2Hr1G087230.1 | Barley | cytosol | 29.31 | 50.0 |
| HORVU3Hr1G059370.1 | Barley | cytosol | 27.59 | 47.06 |
| HORVU6Hr1G039070.1 | Barley | cytosol | 26.72 | 45.59 |
| GSMUA_Achr6P10580_001 | Banana | nucleus | 37.93 | 43.14 |
| KXG38577 | Sorghum | cytosol | 40.52 | 41.23 |
| TraesCS4B01G286900.1 | Wheat | nucleus | 41.38 | 40.68 |
| KRH59453 | Soybean | cytosol | 44.83 | 40.31 |
| Zm00001d027851_P001 | Maize | cytosol | 37.07 | 40.19 |
| TraesCS4A01G017200.1 | Wheat | nucleus | 39.66 | 39.66 |
| Zm00001d033003_P001 | Maize | cytosol | 38.79 | 38.79 |
| TraesCS4D01G285600.1 | Wheat | nucleus | 39.66 | 38.66 |
| EER92785 | Sorghum | cytosol, mitochondrion, nucleus | 39.66 | 37.7 |
| Zm00001d014200_P001 | Maize | nucleus | 38.79 | 37.19 |
| Os03t0169900-01 | Rice | cytosol | 37.07 | 37.07 |
| GSMUA_Achr10P... | Banana | nucleus | 39.66 | 35.94 |
| Os10t0405300-01 | Rice | plasma membrane | 36.21 | 35.59 |
| Zm00001d048317_P001 | Maize | cytosol | 36.21 | 34.15 |
| HORVU2Hr1G071440.2 | Barley | cytosol | 31.9 | 33.64 |
| HORVU5Hr1G046790.1 | Barley | cytosol | 31.03 | 30.25 |
| HORVU0Hr1G012080.1 | Barley | cytosol | 31.9 | 29.13 |
| GSMUA_Achr3P21420_001 | Banana | nucleus | 37.07 | 29.05 |
| KRH15631 | Soybean | plastid | 43.1 | 28.9 |
| HORVU1Hr1G071050.2 | Barley | cytosol | 28.45 | 27.97 |
Protein Annotations
| EnsemblPlants:CDY08844 | EnsemblPlantsGene:GSBRNA2T00000811001 | PANTHER:PTHR33882 | PANTHER:PTHR33882:SF2 | ProteinID:CDY08844 | ProteinID:CDY08844.1 |
| UniParc:UPI0004EE24C5 | UniProt:A0A078F729 | MapMan:35.2 | : | : | : |
Description
BnaA06g23800DBnaA06g23800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F729]
Coordinates
chrLK031989:-:851261..853072
Molecular Weight (calculated)
13353.5 Da
IEP (calculated)
8.509
GRAVY (calculated)
-1.134
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLKENKNS PWLSVPQFGD WDQKGGTIPD YSMDFTKIRE MRKQNKRDPS RASLGNEEDL INPFHNQPTT VDNTKPKLTT VHSDNNRTKT EFSHHQPLSP
101: STRRGIFSCF NCCVKA
101: STRRGIFSCF NCCVKA
001: MEDRKENKNS PWLSVPQFGD WDQKGGSIDY SMDFSKIREM RKLNKRDASR ASLGNEEELI NPFHDQPPVD TAKPKKLTTV HSDNNNRNEF SHHHPHSPSR
101: RRRIFSCFNC CVKA
101: RRRIFSCFNC CVKA
Arabidopsis Description
At5g64850 [Source:UniProtKB/TrEMBL;Acc:Q0WN19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.