Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31298 | Canola | nucleus | 98.29 | 99.14 |
| CDX81261 | Canola | nucleus | 84.62 | 85.34 |
| CDY14517 | Canola | nucleus | 83.76 | 84.48 |
| CDY08844 | Canola | nucleus | 82.91 | 83.62 |
| AT5G64850.1 | Thale cress | nucleus | 76.07 | 78.07 |
| CDX69874 | Canola | nucleus | 68.38 | 71.43 |
| CDY21617 | Canola | nucleus | 68.38 | 70.8 |
| CDY40070 | Canola | nucleus | 66.67 | 69.03 |
| CDX85786 | Canola | nucleus | 65.81 | 68.14 |
| Bra031897.1-P | Field mustard | cytosol | 87.18 | 66.67 |
| Solyc04g051820.2.1 | Tomato | nucleus | 53.85 | 64.29 |
| CDY18692 | Canola | nucleus | 74.36 | 61.7 |
| VIT_07s0031g01630.t01 | Wine grape | nucleus | 51.28 | 61.22 |
| KRH53801 | Soybean | nucleus | 52.14 | 59.8 |
| Solyc05g051710.2.1 | Tomato | nucleus | 52.14 | 59.22 |
| Solyc04g011910.2.1 | Tomato | nucleus | 47.86 | 58.33 |
| KRH43319 | Soybean | nucleus | 45.3 | 55.21 |
| KRH64143 | Soybean | cytosol, endoplasmic reticulum, nucleus | 46.15 | 54.0 |
| PGSC0003DMT400077395 | Potato | nucleus | 48.72 | 53.77 |
| PGSC0003DMT400042668 | Potato | nucleus | 45.3 | 51.96 |
| HORVU2Hr1G087230.1 | Barley | cytosol | 27.35 | 47.06 |
| HORVU3Hr1G059370.1 | Barley | cytosol | 26.5 | 45.59 |
| HORVU6Hr1G039070.1 | Barley | cytosol | 24.79 | 42.65 |
| GSMUA_Achr6P10580_001 | Banana | nucleus | 35.9 | 41.18 |
| KXG38577 | Sorghum | cytosol | 39.32 | 40.35 |
| Zm00001d027851_P001 | Maize | cytosol | 36.75 | 40.19 |
| TraesCS4B01G286900.1 | Wheat | nucleus | 40.17 | 39.83 |
| KRH59453 | Soybean | cytosol | 43.59 | 39.53 |
| TraesCS4A01G017200.1 | Wheat | nucleus | 37.61 | 37.93 |
| Zm00001d014200_P001 | Maize | nucleus | 38.46 | 37.19 |
| Zm00001d033003_P001 | Maize | cytosol | 36.75 | 37.07 |
| TraesCS4D01G285600.1 | Wheat | nucleus | 37.61 | 36.97 |
| Os10t0405300-01 | Rice | plasma membrane | 36.75 | 36.44 |
| Os03t0169900-01 | Rice | cytosol | 35.9 | 36.21 |
| EER92785 | Sorghum | cytosol, mitochondrion, nucleus | 35.9 | 34.43 |
| Zm00001d048317_P001 | Maize | cytosol | 35.9 | 34.15 |
| GSMUA_Achr10P... | Banana | nucleus | 35.9 | 32.81 |
| HORVU2Hr1G071440.2 | Barley | cytosol | 30.77 | 32.73 |
| HORVU5Hr1G046790.1 | Barley | cytosol | 29.91 | 29.41 |
| KRH15631 | Soybean | plastid | 41.88 | 28.32 |
| HORVU1Hr1G071050.2 | Barley | cytosol | 28.21 | 27.97 |
| GSMUA_Achr3P21420_001 | Banana | nucleus | 34.19 | 27.03 |
| HORVU0Hr1G012080.1 | Barley | cytosol | 29.06 | 26.77 |
Protein Annotations
| EnsemblPlants:CDY46828 | EnsemblPlantsGene:GSBRNA2T00086270001 | PANTHER:PTHR33882 | PANTHER:PTHR33882:SF2 | ProteinID:CDY46828 | ProteinID:CDY46828.1 |
| UniParc:UPI0004EB400E | UniProt:A0A078IC67 | MapMan:35.2 | : | : | : |
Description
BnaC02g43360DBnaC02g43360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC67]
Coordinates
chrLK032686:+:177774..180601
Molecular Weight (calculated)
13518.8 Da
IEP (calculated)
8.911
GRAVY (calculated)
-1.174
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDQKENKNS PWLSVPQFGD WDQKGGPVPD YSMDFSKIRE MRKQHKRDPS RASLGNEQDF INPFHNQPTS VDKTKAKLTT VHSDNNITNN ELIPHHQRHP
101: PSTRRGIFSC FNCCVKA
101: PSTRRGIFSC FNCCVKA
001: MEDRKENKNS PWLSVPQFGD WDQKGGSIDY SMDFSKIREM RKLNKRDASR ASLGNEEELI NPFHDQPPVD TAKPKKLTTV HSDNNNRNEF SHHHPHSPSR
101: RRRIFSCFNC CVKA
101: RRRIFSCFNC CVKA
Arabidopsis Description
At5g64850 [Source:UniProtKB/TrEMBL;Acc:Q0WN19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.