Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69874 | Canola | nucleus | 88.39 | 88.39 |
| CDY21617 | Canola | nucleus | 88.39 | 87.61 |
| CDY40070 | Canola | nucleus | 83.93 | 83.19 |
| CDX85786 | Canola | nucleus | 83.04 | 82.3 |
| Bra028607.1-P | Field mustard | nucleus | 81.25 | 80.53 |
| Solyc04g051820.2.1 | Tomato | nucleus | 59.82 | 68.37 |
| VIT_07s0031g01630.t01 | Wine grape | nucleus | 58.04 | 66.33 |
| AT5G64850.1 | Thale cress | nucleus | 66.96 | 65.79 |
| KRH53801 | Soybean | nucleus | 58.04 | 63.73 |
| Solyc05g051710.2.1 | Tomato | nucleus | 54.46 | 59.22 |
| KRH43319 | Soybean | nucleus | 49.11 | 57.29 |
| Solyc04g011910.2.1 | Tomato | nucleus | 49.11 | 57.29 |
| PGSC0003DMT400042668 | Potato | nucleus | 51.79 | 56.86 |
| KRH64143 | Soybean | cytosol, endoplasmic reticulum, nucleus | 50.0 | 56.0 |
| PGSC0003DMT400077395 | Potato | nucleus | 49.11 | 51.89 |
| HORVU2Hr1G087230.1 | Barley | cytosol | 30.36 | 50.0 |
| HORVU3Hr1G059370.1 | Barley | cytosol | 29.46 | 48.53 |
| HORVU6Hr1G039070.1 | Barley | cytosol | 27.68 | 45.59 |
| GSMUA_Achr6P10580_001 | Banana | nucleus | 41.07 | 45.1 |
| Bra009071.1-P | Field mustard | nucleus | 88.39 | 41.6 |
| KRH59453 | Soybean | cytosol | 47.32 | 41.09 |
| TraesCS4B01G286900.1 | Wheat | nucleus | 42.86 | 40.68 |
| TraesCS4A01G017200.1 | Wheat | nucleus | 41.96 | 40.52 |
| Zm00001d027851_P001 | Maize | cytosol | 38.39 | 40.19 |
| KXG38577 | Sorghum | cytosol | 40.18 | 39.47 |
| TraesCS4D01G285600.1 | Wheat | nucleus | 41.07 | 38.66 |
| Zm00001d033003_P001 | Maize | cytosol | 37.5 | 36.21 |
| Os03t0169900-01 | Rice | cytosol | 37.5 | 36.21 |
| EER92785 | Sorghum | cytosol, mitochondrion, nucleus | 39.29 | 36.07 |
| GSMUA_Achr10P... | Banana | nucleus | 41.07 | 35.94 |
| Os10t0405300-01 | Rice | plasma membrane | 37.5 | 35.59 |
| Zm00001d048317_P001 | Maize | cytosol | 38.39 | 34.96 |
| HORVU2Hr1G071440.2 | Barley | cytosol | 33.93 | 34.55 |
| Zm00001d014200_P001 | Maize | nucleus | 35.71 | 33.06 |
| HORVU5Hr1G046790.1 | Barley | cytosol | 33.93 | 31.93 |
| HORVU1Hr1G071050.2 | Barley | cytosol | 33.04 | 31.36 |
| HORVU0Hr1G012080.1 | Barley | cytosol | 34.82 | 30.71 |
| KRH15631 | Soybean | plastid | 46.43 | 30.06 |
| GSMUA_Achr3P21420_001 | Banana | nucleus | 39.29 | 29.73 |
Protein Annotations
| MapMan:35.2 | EntrezGene:830857 | UniProt:A0A178UAF4 | ProteinID:AED91471.1 | EMBL:AK176727 | ArrayExpress:AT5G09960 |
| EnsemblPlantsGene:AT5G09960 | RefSeq:AT5G09960 | TAIR:AT5G09960 | RefSeq:AT5G09960-TAIR-G | EnsemblPlants:AT5G09960.1 | TAIR:AT5G09960.1 |
| EMBL:BT024549 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 |
| RefSeq:NP_568222.1 | ProteinID:OAO90082.1 | PFAM:PF05627 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33882 | PANTHER:PTHR33882:SF2 | UniProt:Q67XU1 |
| InterPro:TypeIII_avirulence_cleave | UniParc:UPI0000162483 | SEG:seg | : | : | : |
Description
At5g09960 [Source:UniProtKB/TrEMBL;Acc:Q67XU1]
Coordinates
chr5:+:3106302..3107904
Molecular Weight (calculated)
12875.9 Da
IEP (calculated)
6.932
GRAVY (calculated)
-1.237
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDRKEKNT PWLSVPQFGD WDQKGGGTMP DYSMDFTKIR EMRKQNKRDP SRASLGNEEE LIKPPESATS TAELTTVQSE NQREFSPSHH HQPHSPSTRR
101: SMFSCFNCCV KA
101: SMFSCFNCCV KA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.