CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30196	Canola	cytosol	61.01	58.92
CDY06776	Canola	cytosol	35.95	49.82
CDY46706	Canola	mitochondrion	63.54	47.09
CDX97701	Canola	cytosol	24.56	45.75
CDY43524	Canola	cytosol	56.71	44.27
CDY63460	Canola	cytosol, mitochondrion	37.72	35.82
CDY21921	Canola	plastid	30.63	31.84
CDY41709	Canola	peroxisome	41.01	30.8
CDY29992	Canola	cytosol	20.25	30.53
CDY63290	Canola	cytosol	38.48	30.28
CDY60784	Canola	cytosol	25.57	30.06
CDY51540	Canola	nucleus	37.22	28.66
CDY36839	Canola	cytosol	43.8	28.59
CDY28703	Canola	cytosol	35.7	28.31
CDY58516	Canola	nucleus	35.44	27.89
CDY22036	Canola	cytosol	41.77	27.68
CDY21132	Canola	cytosol	42.53	27.45
CDY52789	Canola	cytosol	27.59	26.85
CDY52787	Canola	nucleus	42.53	26.62
CDY27940	Canola	cytosol	37.47	26.24
CDY48718	Canola	cytosol	24.56	26.15
CDY29993	Canola	cytosol	40.76	26.09
CDY52927	Canola	cytosol	24.81	25.99
CDY42579	Canola	nucleus	17.97	25.91
CDY69979	Canola	nucleus	41.52	25.75
CDY44167	Canola	cytosol	31.9	25.61
CDY65338	Canola	cytosol	42.53	25.07
CDX74183	Canola	cytosol	21.52	24.71
CDY22034	Canola	endoplasmic reticulum	38.99	24.48
CDX93183	Canola	cytosol	41.27	24.47
CDY44574	Canola	cytosol	29.11	23.86
CDY22883	Canola	cytosol	39.24	23.74
CDY64703	Canola	cytosol	39.75	23.64
CDX67463	Canola	cytosol	27.59	23.49
CDY27938	Canola	cytosol	25.57	23.01
CDX88733	Canola	cytosol	35.19	22.28
CDX71062	Canola	cytosol	34.43	21.73
CDY09240	Canola	cytosol	26.08	21.68
CDY30007	Canola	cytosol, nucleus, plastid	36.2	21.5
CDY09238	Canola	cytosol	25.82	21.47
CDX74184	Canola	plasma membrane	22.28	21.46
CDY40661	Canola	cytosol	39.49	20.47
CDY36353	Canola	plastid	15.95	20.19
CDY50383	Canola	cytosol	41.01	19.22
CDY22035	Canola	cytosol	42.28	18.85
CDY22052	Canola	nucleus	28.1	17.54
CDX82703	Canola	cytosol	42.78	17.51
KRG95394	Soybean	nucleus	24.56	17.11
KRH67075	Soybean	nucleus	24.05	16.67
CDY50382	Canola	cytosol	41.27	16.43

Protein Annotations

EnsemblPlants:CDY63456	EnsemblPlantsGene:GSBRNA2T00039309001	GO:A0A078JBI9	InterPro:DC1	InterPro:Znf_PHD	PANTHER:PTHR32410
PFAM:PF03107	ProteinID:CDY63456	ProteinID:CDY63456.1	SMART:SM00249	SUPFAM:SSF57889	UniParc:UPI0004EE3C3C
UniProt:A0A078JBI9	MapMan:35.2	:	:	:	:

Description

BnaCnng42120DBnaCnng42120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBI9]

Coordinates

chrLK034302:+:88..11898

Molecular Weight (calculated)

45938.1 Da

IEP (calculated)

6.181

GRAVY (calculated)

-0.138

Length

395 amino acids

Sequence
(BLAST)

001: MLEWPEVKRC KLCGEKLFYM FYHCSICDFV VDTACAKNPP PNAHEHQLSV TPRKISFDCD ACGMAGHRSP YSCQQCDFMI HQSCIDLPEI INVNRHEHRL
101: SRCLHLSPGS WICGFCHKKV DWSYGAYSCS ICPNYAIHSK CAIRDDVWDK LELKGIPEEP QDMEPFKVID ENLICHFSHE EHYLQLNEED IIFGGSILCE
201: ACVLPIYSQA FYSCCTTISE SIIHESHPCT LYYNIGKFIE CASCNSSKYQ FLSDDCSFGL DTRCVALPKA TQHWYDEHLL FLCYEKNKRG ECWCDICEEQ
301: IGTMIWFYTC DSCCVTFHIE CVLGDFSRFM PGRIVKFEEW RIKTMQTSPG FLPRCYVCHT RRAVPFVLNV FYPKKNVFIC SLECLFRTSL REDLY

Best Arabidopsis Sequence Match ( AT4G01920.1 )
(BLAST)

001: MDSKGVLMPL IHEHLMMPWK NLKRGPCCGC CGRFEAISDG YYCKTCDFFV RKNCADEPSE YIKHPSHPKH TLQLLRPERP TNFCNLCGRM CPIFYRCDLC
101: DFDMDLYCSK YPPPEVIDIS KTHHHRLTLL KKWIKQCICA KCCKIIGNEF PYNCHECDLS FHVDCVWYPP ELELRLEVNH SYHSLHPLKL YAKGQLPDYS
201: DGKCRLCARK IDETFFFHCS PCNFTLDKVC VLRPPQQSLL NLKAHDHQLT LLPKLDSFTC NACGLKGDRS PYVCFQCGFM IHQDCLGLPR LININRHDHR
301: VSRTSVLGVV NSVCGVCRKK VDWSYGGFSC QRCHGYVVHS KCATRKDVWN GKELEGLPEE TEDIEPYVVI DENTIQHFSH KEHYLRLNVN GVLCDDNKRC
401: KACTHPICLQ SFYGCMDCNF ILHQNCAGFL RMKWHVLHNE RLTLVTNKDE GFRCYACDRL SNGFKYQHGN KAFDVRCISI SEPHIHPSHP NHPLYYFPSD
501: EVQWCTGCNM EQDFVLSCIE DNCGFLLCFG CATLPQMVKH RVHDHPLSLC YGEKASGKYW CDICEKETNP HTWFYTCKDH QASLHTKCVL GDLSSLMRRS
601: TIKIEGTSYE VVLNNSISRP FCSWCKMHCI FPIILKTLGA TNEYSCSLEC AECRYTDR

Arabidopsis Description

AT4g01920/T7B11_18 [Source:UniProtKB/TrEMBL;Acc:Q9SYI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.