CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52789	Canola	cytosol	75.94	39.66
CDY21921	Canola	plastid	60.38	33.68
CDY06776	Canola	cytosol	38.68	28.77
CDY29992	Canola	cytosol	35.38	28.63
CDY22036	Canola	cytosol	76.89	27.35
CDY52787	Canola	nucleus	77.36	25.99
CDY69979	Canola	nucleus	75.0	24.96
CDY63456	Canola	cytosol	45.75	24.56
CDY65338	Canola	cytosol	75.94	24.03
CDY52927	Canola	cytosol	42.45	23.87
CDY22052	Canola	nucleus	66.98	22.43
CDY30196	Canola	cytosol	42.92	22.25
CDY48718	Canola	cytosol	38.68	22.1
CDX74183	Canola	cytosol	35.38	21.8
CDY22034	Canola	endoplasmic reticulum	64.62	21.78
CDY42579	Canola	nucleus	26.42	20.44
CDY63460	Canola	cytosol, mitochondrion	39.15	19.95
CDY51540	Canola	nucleus	47.17	19.49
CDY28703	Canola	cytosol	43.4	18.47
CDY22035	Canola	cytosol	76.42	18.28
CDY41709	Canola	peroxisome	45.28	18.25
CDY46706	Canola	mitochondrion	45.75	18.2
CDX67463	Canola	cytosol	39.62	18.1
CDY63290	Canola	cytosol	41.51	17.53
CDX74184	Canola	plasma membrane	33.02	17.07
CDY50383	Canola	cytosol	67.45	16.96
CDY09238	Canola	cytosol	37.26	16.63
CDY21132	Canola	cytosol	47.64	16.5
CDY09240	Canola	cytosol	36.79	16.42
CDY29993	Canola	cytosol	46.7	16.05
CDY36839	Canola	cytosol	45.75	16.03
CDY43524	Canola	cytosol	38.21	16.01
CDY27940	Canola	cytosol	41.98	15.78
CDX93183	Canola	cytosol	49.06	15.62
CDY50382	Canola	cytosol	66.51	14.21
CDY58516	Canola	nucleus	33.49	14.14
CDY60784	Canola	cytosol	20.28	12.8
CDY30007	Canola	cytosol, nucleus, plastid	40.09	12.78
CDY22883	Canola	cytosol	38.68	12.56
CDY64703	Canola	cytosol	39.15	12.5
CDY40661	Canola	cytosol	42.92	11.94
CDX88733	Canola	cytosol	34.91	11.86
CDX71062	Canola	cytosol	34.91	11.82
CDY44167	Canola	cytosol	24.53	10.57
CDX82703	Canola	cytosol	47.64	10.47
CDY27938	Canola	cytosol	18.4	8.88
KRG95394	Soybean	nucleus	22.17	8.29
KRH67075	Soybean	nucleus	22.17	8.25
CDY44574	Canola	cytosol	15.09	6.64
CDY36353	Canola	plastid	8.96	6.09

Protein Annotations

EnsemblPlants:CDX97701	EnsemblPlantsGene:GSBRNA2T00104950001	GO:A0A078E913	InterPro:DC1	PANTHER:PTHR32410	PFAM:PF03107
ProteinID:CDX97701	ProteinID:CDX97701.1	SEG:seg	SUPFAM:SSF57889	UniParc:UPI0004EEE5B7	MapMan:35.2

Description

BnaA05g23780D

Coordinates

chrLK031900:+:1050856..1052172

Molecular Weight (calculated)

24559.4 Da

IEP (calculated)

7.578

GRAVY (calculated)

-0.401

Length

212 amino acids

Sequence
(BLAST)

001: MRCVLNPPTQ SLVDLKAHDH QLTLLPRLDS FTCNACGLKG DRSPYACFHC GFMIHQECLG LPRLININRH DHRISRTSVL GVVNSVCGFC RKKVDWTCGG
101: FSCQRCPNYV IHSKCATRKD VWNGKELEGV SEEEEDIEPY VVIDDNTIQH FSHKEHHLRF HESNIMYEEK KWECKSRCMY PINLKFLGTS ETYICSNDCA
201: FSFCSPFFRK IQ

Best Arabidopsis Sequence Match ( AT4G01910.1 )
(BLAST)

001: MDSKGVVSLP LIHNHQMMPW NDLRKGDCCG HFEAISDGYY CKRCDFFVHK TCGDGVSEYI EHPSHPNHTL ELCSNLRFHC DLCGRRTNYL SYYCEICGFI
101: VDLHCAMYPP PEFIENSERH HHKLTLLKER IAAFDCDAKC GKISGNEFAY KCQECDLTFH VDCVWHPSEV YHPLEVNHSY HPSHPLKLHT GQRPDYSDGA
201: CRLCARKIDD RYFYHCSSCN FTLDMRCVLH PPQQSLLNLK AHDHQLTLLP RLDSFTCNAC GLKGDRSPYV CFQCGFMIHQ DCLSLPRLIN INRHDHRVSR
301: TSVLGVVNSV CEVCHRKVDW TCGGFSCQRC SGYVVHSKCA TNKDVWNGKE LEGVPEETED IKPFVVIDNN TIQHFSHKKH YLRLHVNGVL CDDKKRCRAC
401: THPICLQSFY GCMDCDFILH QNCAGFPRKR WHVLHNERLT LVSYEYDFFQ CQACNRFSNG FSYQYSGITF DVGCGSISEP FVHPSHPDHP LYYTLLDEET
501: KSSCNGCNKS SYSVLRCIED DCRFAICFKC ATFPQVVKHR VDDHPLSLCF DKEASGKYWC DICEKETNPE TWFYTCKDYR ASLHIKCVLG DFSWLMPGST
601: IDLSELSKVV LNNSISRPFC SGCKMHCIFP IILKIVGTSD KYFCSIECAF G

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SYI8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.