Factsheet for Bra036288.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007884.1-P
Bra013844.1-P
Bra016263.1-P
Bra018074.1-P
Bra019533.1-P
Bra024332.1-P
Bra031897.1-P
Bra033501.1-P
Bra033503.1-P
Bra037798.1-P
Bra038281.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01920.1	Bra007884.1-P	AT1G69810.1	21798944
AT4G01920.1	Bra016263.1-P	AT1G69810.1	21798944
AT4G01920.1	Bra038281.1-P	AT3G45640.1	21798944
AT4G01920.1	Bra018074.1-P	AT3G48210.1	21798944
AT4G01920.1	Bra019533.1-P	AT3G48210.1	21798944
AT4G01920.1	Bra033501.1-P	AT4G15700.1	21798944
AT4G01920.1	Bra033503.1-P	AT4G15700.1	21798944
AT4G01920.1	Bra013844.1-P	AT4G24900.1	21798944
AT4G01920.1	Bra024332.1-P	AT5G64850.1	21798944
AT4G01920.1	Bra031897.1-P	AT5G64850.1	21798944
AT4G01920.1	Bra037798.1-P	AT5G64850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52789	Canola	cytosol	21.82	89.9
AT4G01925.1	Thale cress	cytosol	12.25	73.21
AT4G11540.1	Thale cress	cytosol	21.94	69.9
AT4G01910.1	Thale cress	cytosol	26.6	68.36
AT4G01930.1	Thale cress	cytosol	26.48	67.94
AT4G01920.1	Thale cress	cytosol	26.18	66.57
AT4G01740.1	Thale cress	cytosol	25.34	65.03
AT4G01760.1	Thale cress	cytosol	25.88	64.92
AT4G11550.1	Thale cress	cytosol	25.82	64.67
AT4G02190.1	Thale cress	cytosol	25.4	64.49
AT4G11390.2	Thale cress	cytosol	17.75	54.4
Bra040595.1-P	Field mustard	cytosol	12.13	47.32
AT4G02180.1	Thale cress	cytosol	26.6	44.99
Bra024127.1-P	Field mustard	nucleus	10.76	44.01
Bra017007.1-P	Field mustard	nucleus	14.94	42.88
Bra020274.1-P	Field mustard	nucleus	15.72	42.01
Bra025591.1-P	Field mustard	nucleus	14.52	41.12
Bra028463.1-P	Field mustard	cytosol	12.55	39.18
Bra033522.1-P	Field mustard	cytosol	11.18	38.09
Bra011134.1-P	Field mustard	mitochondrion	15.36	37.09
Bra040143.1-P	Field mustard	nucleus	13.27	36.27
Bra001113.1-P	Field mustard	cytosol	9.56	34.71
Bra025569.1-P	Field mustard	nucleus	9.92	31.14
KRG95394	Soybean	nucleus	9.62	28.4
KRH67075	Soybean	nucleus	9.26	27.19

Protein Annotations

Gene3D:3.30.365.10	Gene3D:3.30.365.20	Gene3D:3.30.40.10	MapMan:35.1	InterPro:AldOxase/xan_DH_Mopterin-bd	InterPro:AldOxase/xan_DH_Mopterin-bd_sf
EnsemblPlantsGene:Bra036288	EnsemblPlants:Bra036288.1	EnsemblPlants:Bra036288.1-P	ncoils:Coil	InterPro:DC1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0035556
GO:GO:0046872	GO:GO:0055114	InterPro:IPR002219	InterPro:IPR013083	UniProt:M4F5D2	InterPro:PE/DAG-bd
PFAM:PF02738	PFAM:PF03107	SMART:SM00109	SMART:SM00249	SUPFAM:SSF56003	SUPFAM:SSF57889
UniParc:UPI0002541FFC	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT4G02190 (E=1e-239) | DC1 domain-containing protein

Coordinates

chrA09:-:320821..341476

Molecular Weight (calculated)

190329.0 Da

IEP (calculated)

6.975

GRAVY (calculated)

-0.369

Length

1673 amino acids

Sequence
(BLAST)

0001: MESEGVSFPL IHEHPMKPWN DLRKGDCCGR FVSVSDGYYC INCDFFVHKK CGDNLSEFIV HPSHPNHTLR IRSKKGFCIC RLCGRETWNT FYRCKVCDFK
0101: VDLDCAKHPP PLVIENFETH SHKLTFLKEL TEFYCCAKCG KAGDGFTYKC EECDVAFHVD CVWHPTGELN YSPEVSHSYH SLHPLKLLRG PPPDYSDGKC
0201: RLCENEVDEE LFYHCSSCNF TLDMRCVLNS PPQSLVDLKA HGHQLTLLPR LFSFSCNACG LKGDRSPYMC VQCDFMIHQD CLGLPRVINI NRHDHRVSRT
0301: LILGVVNSVC GVCRKKVDWT CGGFSCQRCP GYVVHSKCAT REDVWNGKEL EGIPEEEEDV EPYVVVDENT IQHFSHKEHN IRLHGNGVLK EHNLRLHGNG
0401: VLYEDNKWCS ACTHPIGLQS FYDCIDCDFS LHHKCAECPK KKWHVLHNER LTLVTNKELR VFSCDACNRT SNGFIYKDGD KMLDVLCGSI TEPFVHPSHP
0501: EHPLYYIPTG ELCDGCSNIE RRMLRCVEGD CEYVLGFKCA TLPQVVKHRI DDHPLSLCYG EKKASGKYWC DICEERTYPN NWFYTCKDQR ASLHTECVLG
0601: DFEGLMPRSV AKLWGESYEV ELNNSIEGAF VQGLGWAALE EVKCGDASHK RIKPGNLLSC GPGYYKIPSI NDIPFNFNVS LLKAGALVHV YTVLVTHGGV
0701: EMGQGLHTKV AQVSASAFNI PLSSVFVSET STGKVIDFLR TERTITVKQC ITSVITHISP SFVLFAIKDA IKAARAEVGL GRKWFPLVTP ATPERIRIAC
0801: FDEFTSPFNG PLDNKRHRGS THRVLPPTVV GGTAPATSFR RLSPQCGTQQ APRCRRAEGG AARETEEHPT RNEALNDQQQ TGPREALSEA IEEVREAMLQ
0901: YTKCADPTES AARRERMRKA EEEGELEETA LLMIQANQDK AAMEEELPQD MKTSAERIPA ILRLGPSPIA VSEATAVPEK KKLGRPPGRR RVHQSPRLIK
1001: GSNSKKRKTL QTKPPTVRRK LNTDDAVDTR QRDLCIRERK MESEGVLLPL IHEHPMMPWN DLRRGDCCGR YVSQSDGYYC KLCDFFVHKE CGELTEFIID
1101: HPAHPDHTLR LQGIRGHVCD ICERKIKNLC YRCCDGCDFD MDLHCAKYPP PDVIDNFETH SHKLTLVKKN TVFDCSAKCG KAYGLSYKCE ECDVAFPVEC
1201: VWHPEASELN YSPERLVNYF IIVHLVTSLW VSIVFLIHHK NLLLIRKCMI TNSPFFHDSI LLLVMLAVCG LKGDRSPYAC FDCGFMIHQD CLGLPRVINI
1301: NRHDHRVSRT SVLGDAAMNS VCGVCRKKVD WTCGGFSCKR CPGYVIHSKC ATRDDVWNGE ELEGVHEEEE EDTEPYVVID DNTIRHFSHE EHNLRRIHGN
1401: GIMYEEQKRC KACTHPIGLK SFYDCMDCDF SLHQKCAECP KTKRHVLHND RLTLVTNEEL ADFLCKGCDL NYNGFMYKHG DIELDVLCGS ISEPFVHPSH
1501: PHHPLYYMPT EDFEICNGCN RMELHVLRCI EIDCVFVLGF KCATLPQVVK HRVDDHPLSL CYGEEEEASG KYWCDICERE TNPKEWFYTC KDQRASLHTK
1601: CVLGDLGRFM PRSVVKFQNR SFEVVLNKSV TRPFCSKCKS RCIYPIILKL LGISETSFCS FECAVLFYWF GEK

Best Arabidopsis Sequence Match ( AT4G01930.1 )
(BLAST)

001: MDSEGVSLPL IHKHHMLPWN DMRKGDCCRR FEAISDGYYC KTCDFFVHKS CGDRSSEYIE HPSHPSHALQ LLRKPGHTRN CNLCGISIKS LFYNCEICNF
101: NVHMYCAKYP PPQVIDISET HHHKLNLYKK PNYIDCGDKC GKLSYEFSYK CQECDLAFHV DCAWRPSESN LPLEVNHFYH SLHPLKLVRG KLPDYSDRKC
201: RLCGRYIGDR LFYHCSSCNF TLDMRCVLNP PQQSLLNLKA HDHQLTLLPR LDSFTCNACG LKGDRSPYVC FQCGFMIHQD CLDLPRVINI NRHDHRVSRT
301: SVLGVVKSVC GVCHQKVDWT CGGFSCQRCH GYVVHSKCAT RKDVWNGKEL EGVPEETEDI QPYVVIDENT IQHFSHKEHY LRLHVNGVLC DDNKWCSACT
401: HPICLQSFYG CMDCDFILHQ NCAGFRRMKW HVLHNERLTL VINEAEPFRC YACDRWSNGF RYHQGNITFD VRCGSIAEPF LHPSHPDHPL YHTLPDGGIK
501: ICNGCKNGFY DVLGCIEDDC RFAICFKCAT FPQVVKHRVD DHPLSLCYGE KASGKYWCDI CEKETNPEIW FYTCKDYQAS LHIECVVGAL SLLMPRSTIN
601: PWEKSYEVVL NNSASRPFCS YCELRCIFPI ILKRLGSSDN YVCSYFCALF CI

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.