CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021951_P001	Maize	plastid	98.29	98.92
Zm00001d006705_P001	Maize	plastid	91.67	92.46
TraesCS2D01G197200.1	Wheat	plastid	87.61	89.32
HORVU2Hr1G036080.15	Barley	plastid	87.39	89.3
TraesCS2A01G190800.1	Wheat	cytosol	83.12	89.22
TraesCS2B01G216300.1	Wheat	plastid	87.18	89.08
Os07t0584900-01	Rice	plastid	88.89	89.08
HORVU7Hr1G038870.1	Barley	plastid	52.14	85.02
GSMUA_Achr4P06990_001	Banana	plastid	62.39	72.46
GSMUA_Achr4P11070_001	Banana	cytosol	60.68	67.3
GSMUA_Achr3P29830_001	Banana	cytosol	58.76	66.11
GSMUA_Achr1P22790_001	Banana	mitochondrion	60.9	62.91
VIT_00s2269g00010.t01	Wine grape	plastid	54.91	56.86
KRH51173	Soybean	cytosol	51.71	56.54
PGSC0003DMT400060674	Potato	plastid	54.06	56.1
KRH01984	Soybean	cytosol	50.64	55.76
Solyc04g014810.2.1	Tomato	plastid	53.63	55.65
Solyc11g012440.1.1	Tomato	cytosol, plastid	54.49	55.56
PGSC0003DMT400034564	Potato	nucleus, plastid	53.85	55.02
KRH36562	Soybean	plastid	53.63	54.8
KRH11541	Soybean	plastid	53.42	54.7
CDY09688	Canola	cytosol	51.5	53.08
Bra012713.1-P	Field mustard	cytosol	51.5	52.97
CDX90518	Canola	plastid	51.5	52.97
Bra038470.1-P	Field mustard	plastid	52.35	52.35
AT4G16490.1	Thale cress	plastid	51.71	51.27
EER97464	Sorghum	cytosol	34.62	44.75
EES06804	Sorghum	cytosol	21.58	21.77
EER87680	Sorghum	cytosol	27.78	21.63
EES07310	Sorghum	cytosol	27.99	20.53
EES01872	Sorghum	cytosol	34.83	20.25
OQU79384	Sorghum	cytosol	27.35	19.22
EES15482	Sorghum	cytosol	24.79	18.04
OQU92820	Sorghum	cytosol	28.85	18.02
OQU78182	Sorghum	plastid	24.57	16.94
KXG20946	Sorghum	cytosol	22.86	16.64
EES14396	Sorghum	cytosol	35.68	16.58
KXG33626	Sorghum	plastid	23.72	15.81
EES04812	Sorghum	plastid	23.93	15.36
KXG35540	Sorghum	plasma membrane	23.29	15.22
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	22.86	14.99

Protein Annotations

Gene3D:1.25.10.10	Gene3D:1.25.10.110	MapMan:35.1	EntrezGene:8078965	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	UniProt:C5XCH8	EnsemblPlants:EER97453	ProteinID:EER97453	ProteinID:EER97453.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	InterPro:IPR000225	InterPro:IPR011989	PFAM:PF00514	PFscan:PS50176	PANTHER:PTHR23315
PANTHER:PTHR23315:SF129	SMART:SM00185	EnsemblPlantsGene:SORBI_3002G355400	SUPFAM:SSF48371	unigene:Sbi.1929	UniParc:UPI0001A837C5
RefSeq:XP_002460932.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:71860069..71863779

Molecular Weight (calculated)

47935.1 Da

IEP (calculated)

6.627

GRAVY (calculated)

0.017

Length

468 amino acids

Sequence
(BLAST)

001: MVSLAGSQIP SPSPGQSPCA AARPQRRQGH SMRTIRSALL QPDSSPGSPS PASRDGGADA GDSDIENLTD SVIDFHLREL AATAGPAHPA AVAKSSSAIN
101: AAATELLDLS RDFSDYSSFN SDISGELERL AAAAGAAVPR SDAPDAAAVD LNDLESMDLS ADAAPLERVE PFVLACVQAL GPDAGPDARR AAAARIRLLA
201: KHRSDIRELI GVSGAIPALV PLLRSTDPVA QESAVTALLN LSLEERNRSA ITAAGAIKPL VYALRTGTAP AKQNAACALL SLSGIEENRA TIGACGAIPP
301: LVALLSAGST RGKKDALTTL YRLCSARRNK ERAVSAGAVV PLVHLIGERG SGTCEKAMVV LGSLAGIAEG REAVVEAGGI PALVEAIEDG PAKEKEFAVV
401: ALLQMCSDSP HNRALLVREG AIPPLVALSQ SGSARAKHKA ETLLGYLREQ RQGVGCRAGA VTATSLAR

Best Arabidopsis Sequence Match ( AT4G16490.1 )
(BLAST)

001: MVSVEEPLSH SNSTRFPLTT DFYGSSSPSA ARLHRQAGRS MRTVRSNFYQ SGDQSCSFVG SIGDKSEYAS EFLSDSVIDM RLGELALKNS NSLNSNASSM
101: KEEAFLDISQ AFSDFSACSS DISGELQRLA CLPSPEADRN ESGGDNEAEH DPELEREPCL GFLQRENFST EIIECISPED LQPTVKLCID GLRSSSVAIK
201: RSAAAKLRLL AKNRADNRVL IGESGAIQAL IPLLRCNDPW TQEHAVTALL NLSLHDQNKA VIAAGGAIKS LVWVLKTGTE TSKQNAACAL LSLALLEENK
301: GSIGACGAIP PLVSLLLNGS CRGKKDALTT LYKLCTLQQN KERAVTAGAV KPLVDLVAEE GTGMAEKAMV VLSSLAAIDD GKEAIVEEGG IAALVEAIED
401: GSVKGKEFAI LTLLQLCSDS VRNRGLLVRE GAIPPLVGLS QSGSVSVRAK RKAERLLGYL REPRKEASSS SP

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JMH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.