CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043043_P001	Maize	cytosol	88.32	93.51
Zm00001d012494_P001	Maize	cytosol	88.03	93.21
TraesCS3A01G345800.1	Wheat	plastid	82.62	84.92
Os01t0823900-01	Rice	plastid	81.91	84.56
TraesCS3B01G377600.1	Wheat	plastid	82.62	84.42
TraesCS3D01G339600.1	Wheat	plastid	82.76	84.33
HORVU3Hr1G081300.1	Barley	plastid	81.77	83.43
OQU78182	Sorghum	plastid	68.95	71.28
GSMUA_Achr8P25140_001	Banana	plastid	35.47	59.29
GSMUA_Achr7P22130_001	Banana	cytosol	47.29	52.45
GSMUA_Achr4P00200_001	Banana	plastid	52.14	51.99
Solyc09g018230.1.1	Tomato	plastid	43.59	44.48
PGSC0003DMT400071349	Potato	plastid	43.59	44.22
Bra001998.1-P	Field mustard	cytosol	37.46	44.05
VIT_08s0058g01100.t01	Wine grape	plastid	41.88	43.43
AT5G01830.1	Thale cress	plastid	41.17	42.88
CDX71307	Canola	cytosol	41.03	42.79
Bra019022.1-P	Field mustard	cytosol	41.03	42.73
CDY31406	Canola	cytosol	40.88	42.58
KRH76105	Soybean	cytosol, plastid	40.88	40.88
KRH65448	Soybean	plastid	27.35	39.34
EES04812	Sorghum	plastid	35.19	33.88
EER87680	Sorghum	cytosol	25.78	30.12
EES06804	Sorghum	cytosol	19.37	29.31
EER97464	Sorghum	cytosol	14.39	27.9
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	28.35	27.87
EES15482	Sorghum	cytosol	24.64	26.91
KXG35540	Sorghum	plasma membrane	27.21	26.68
EES07310	Sorghum	cytosol	23.79	26.18
OQU79384	Sorghum	cytosol	24.79	26.13
KXG20946	Sorghum	cytosol	23.65	25.82
OQU92820	Sorghum	cytosol	26.21	24.57
EER97453	Sorghum	plastid	15.81	23.72
EES01872	Sorghum	cytosol	20.94	18.26
EES14396	Sorghum	cytosol	23.65	16.48

Protein Annotations

Gene3D:1.25.10.10	MapMan:15.5.4.1	Gene3D:3.30.40.10	UniProt:A0A1B6Q6T7	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
EnsemblPlants:KXG33626	ProteinID:KXG33626	ProteinID:KXG33626.1	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF147	SMART:SM00185	SMART:SM00504	EnsemblPlantsGene:SORBI_3003G339500
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00081AE2E8	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:66235870..66239678

Molecular Weight (calculated)

75004.5 Da

IEP (calculated)

6.049

GRAVY (calculated)

0.034

Length

702 amino acids

Sequence
(BLAST)

001: MAMPNPRAVL TSAPSPPAAC SSSWSAAAEF MAPATPPSPS DGELLRSLHR LARDLSATAA ETPAPFLRAA LASITRRSRL LAAAFDDLVL CAAAAEEGMP
101: RSASLCLREV LLVLQRFKAL AADCAARSRM RLLLQSDEIE EEVRELHQEM ATLLDLLPGV ELGLAEDVMD LLDLASRQCR RFAPSVSVQA EQALKARVLS
201: LIQEIEREIV PERERLREIL EEVGINDSAT CGEEIESLER EIGENRASER WTDAMIALVG LLRYAKCVLF SATPRPSSDS KPDPEVDEEG EPPAPPPDFR
301: CPITLDIMRE PVVVASGQTY DRESIFRWFD SGKSTCPKTG QVLTVLELVP NKALKNLIAK WCRENGVAME SSEASKSEPA QAVAANKAAL EAARMTASFL
401: VKKLAICFSP DAANRVVHEI RLLSKTGADS RAFVGEAGAV PLLVPLLYSE DAGLQLNAVT ALLNLSILEA NKKRIMHAEG AVEAVAHILS SGATWRAKEN
501: AAAAVLSLAS VHTYRRRLGR NLSIVEKLVH LVRTGPTSTK KDALAALLSL AGERENVGKL VDAGVAQAAL SAISEEETAA AVLAALAKRG GAEAIVGIDG
601: AVARLVAEMR RGTEWGRENA TAALVLLCRR LGARAVTQVM AVPGVEWAIW ELMGTGTDRA RRKAASLGRI CRRWAAASAA DGERGSVCPA ASTVVPPAMM
701: AS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.