Factsheet for Zm00001d041548_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU79384	Sorghum	cytosol	89.73	90.54
Zm00001d030732_P001	Maize	cytosol	89.14	90.08
Os12t0570000-01	Rice	cytosol	61.76	80.27
HORVU5Hr1G021270.1	Barley	cytosol	79.61	78.45
TraesCS5B01G087500.1	Wheat	cytosol	79.17	78.01
TraesCS5D01G093700.1	Wheat	cytosol	79.17	77.78
TraesCS5A01G078400.1	Wheat	cytosol	79.17	77.78
HORVU5Hr1G021280.1	Barley	cytosol	79.61	77.76
GSMUA_Achr6P34170_001	Banana	cytosol	59.38	60.09
KRH29807	Soybean	cytosol	59.08	60.06
KRH24807	Soybean	cytosol	59.08	59.97
VIT_06s0004g04530.t01	Wine grape	cytosol	59.38	58.5
AT2G28830.1	Thale cress	endoplasmic reticulum	50.3	58.08
Solyc11g066040.1.1	Tomato	cytosol	56.7	57.47
PGSC0003DMT400001049	Potato	cytosol	56.25	56.93
Zm00001d028623_P001	Maize	cytosol	60.12	55.65
PGSC0003DMT400078166	Potato	cytosol	54.46	55.37
Solyc06g076040.2.1	Tomato	cytosol	54.32	55.22
AT3G46510.1	Thale cress	cytosol	53.72	54.7
CDX77213	Canola	cytosol	52.23	54.59
Bra035665.1-P	Field mustard	cytosol	52.83	54.45
Bra018212.1-P	Field mustard	cytosol	52.68	54.38
CDY31736	Canola	cytosol	51.93	54.36
CDX68379	Canola	cytosol	53.12	54.26
Bra033820.1-P	Field mustard	cytosol	53.12	54.26
CDX68380	Canola	cytosol	42.86	54.14
CDX99112	Canola	cytosol	52.53	53.89
CDX86080	Canola	cytosol	52.53	53.81
Zm00001d045632_P004	Maize	cytosol, mitochondrion	47.02	50.16
KRG99865	Soybean	cytosol	41.52	45.22
Zm00001d000381_P001	Maize	cytosol	37.8	39.81
Zm00001d014845_P001	Maize	cytosol	35.71	37.44
Zm00001d031263_P001	Maize	cytosol	35.86	37.36
Zm00001d016501_P001	Maize	cytosol	25.15	36.34
Zm00001d021978_P001	Maize	cytosol	18.3	33.98
Zm00001d006726_P001	Maize	cytosol	17.71	33.06
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	27.53	27.61
Zm00001d053544_P001	Maize	mitochondrion, plastid	28.87	27.52
Zm00001d016225_P001	Maize	plastid	29.02	26.75
Zm00001d021951_P001	Maize	plastid	18.45	26.67
Zm00001d006705_P001	Maize	plastid	18.3	26.51
Zm00001d012494_P001	Maize	cytosol	25.74	26.09
Zm00001d043043_P001	Maize	cytosol	25.74	26.09
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	26.93	26.08
Zm00001d020332_P001	Maize	cytosol	26.64	25.64
Zm00001d035040_P007	Maize	mitochondrion	31.7	24.43
Zm00001d049708_P007	Maize	cytosol	30.8	23.47
Zm00001d003967_P001	Maize	plastid	15.03	22.44
Zm00001d042608_P002	Maize	cytosol	29.46	21.41

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A1D6MWU2	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
ProteinID:ONM33225.1	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF235	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00022083C4
InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d041548	EnsemblPlants:Zm00001d041548_P002	EnsemblPlants:Zm00001d041548_T002	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

U-box domain-containing protein 13

Coordinates

chr3:+:126577794..126583834

Molecular Weight (calculated)

72948.6 Da

IEP (calculated)

5.580

GRAVY (calculated)

-0.227

Length

672 amino acids

Sequence
(BLAST)

001: MAGDRGRGAA ERVDAAVGAV GSGGWEFRNA YRRQLLALSR RIRLLGPFAE ELREARRGSA EQEEQERALA PLADALEEAL DLLQLGRDGS RIFLVLDRDE
101: VMKKFHESIA QLEQALCDFP YDKLDISDEA REQVELVHAQ LKRAKERVDM PDDEFYNELC SLYNKSHDPS AELDILGRLS EKLHLTTIAD LTQESLALHE
201: MVASGGGNDP GEHIEKMSML LKKIKDFVQT QNPETGPLVT AKPMGSNGKP RPVNVPDEFR CPISLELMKD PVIVATGQTY ERALIEKWLA SGHHTCPSTQ
301: QRMPNTTLTP NYVLRSLITQ WCEANGIDPP KRPTQQPDRP TSSCSSSERA SIDALLSKLC SADPEEQRSA AAELRLLAKR NANNRICIAE AGAIPLLLSL
401: LSSSDLQTQE HAVTALLNLS IHEDNKASII LSGAVPGIVH VLKNGSMEAR ENAAATLFSL SVVDEYKVTI GGTGAIPALV VLLSEGRQRG KKDAAAALFN
501: LCIYQGNKGR AIRAGLVPLV MGLVTNPTGA LLDEAMAILS ILSSHPEGKA AIGAAEPVPV LVEMIAGGSP RNRENAAAVM LHLSASVRQS AHLARAQECG
601: IMAPLRELAL NGTGRGKRKA VQLLERMSRF LVQQQEDAVD PRVQELEEIE RQLAAFGPGV TEADVLQQLG AL

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.