Factsheet for Zm00001d038195_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

extracellular: 20408568
plasma membrane: 23353019
nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016928_P010
Zm00001d024430_P002
Zm00001d025580_P001
Zm00001d049480_P005
Zm00001d050868_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48380.1	Zm00001d016928_P010	AT1G71830.1	19616764
AT5G48380.1	Zm00001d024430_P002	AT1G71830.1	19616764
AT5G48380.1	Zm00001d025580_P001	AT1G71830.1	19616764
AT5G48380.1	Zm00001d049480_P005	AT1G71830.1	19616764
AT5G48380.1	Zm00001d050868_P004	AT1G71830.1	19616764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19530	Sorghum	plasma membrane	87.46	90.92
Os05t0414700-01	Rice	plasma membrane	79.52	82.54
GSMUA_Achr6P28640_001	Banana	plastid	30.48	81.7
TraesCS1A01G259600.1	Wheat	plasma membrane	75.24	78.35
TraesCS1D01G259400.1	Wheat	plasma membrane	74.92	78.15
HORVU1Hr1G064780.1	Barley	plasma membrane	74.6	77.81
TraesCS1B01G269900.1	Wheat	plasma membrane	74.44	77.52
GSMUA_Achr9P08150_001	Banana	cytosol, nucleus, plastid	46.98	73.82
Bra038824.1-P	Field mustard	cytosol	35.08	66.77
Zm00001d007277_P001	Maize	plasma membrane	60.79	65.25
GSMUA_Achr2P05730_001	Banana	cytosol, peroxisome, plasma membrane	40.79	61.48
VIT_00s0220g00120.t01	Wine grape	plasma membrane	60.16	61.03
Bra037490.1-P	Field mustard	plastid	44.76	60.26
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	44.29	59.62
VIT_00s2085g00010.t01	Wine grape	plasma membrane	58.57	59.61
PGSC0003DMT400071183	Potato	plasma membrane	57.62	59.22
Solyc06g082920.2.1	Tomato	plasma membrane	57.14	58.73
Bra020705.1-P	Field mustard	plasma membrane	50.63	57.79
CDY48749	Canola	plasma membrane	56.35	56.98
CDX85334	Canola	plasma membrane	56.35	56.98
AT5G48380.1	Thale cress	plasma membrane	56.03	56.94
CDY05685	Canola	plasma membrane	56.19	56.64
Zm00001d039672_P001	Maize	plasma membrane	20.48	50.39
CDY38095	Canola	plasma membrane	18.57	44.15
CDX85492	Canola	plasma membrane	18.57	43.66
CDY38092	Canola	plasma membrane	18.57	43.66
Solyc12g096720.1.1	Tomato	cytosol	9.37	41.55
CDX69430	Canola	extracellular	15.71	41.42
CDY16992	Canola	cytosol, plasma membrane, plastid	13.17	41.29
PGSC0003DMT400070664	Potato	cytosol, plasma membrane, plastid	23.97	40.92
Zm00001d025726_P001	Maize	plasma membrane	40.48	40.35
Zm00001d016331_P001	Maize	vacuole	14.29	40.18
Zm00001d003245_P001	Maize	mitochondrion	39.84	40.1
PGSC0003DMT400075495	Potato	plasma membrane	36.83	39.46
PGSC0003DMT400070657	Potato	peroxisome, plasma membrane, plastid	24.92	39.15
PGSC0003DMT400075494	Potato	plasma membrane	34.92	37.8
PGSC0003DMT400070667	Potato	cytosol	12.86	36.65
PGSC0003DMT400070694	Potato	cytosol	12.22	36.32
CDY07991	Canola	plasma membrane	14.76	35.91
PGSC0003DMT400070666	Potato	plastid	26.35	35.62
Bra001255.1-P	Field mustard	plasma membrane	14.6	35.52
Zm00001d018344_P001	Maize	extracellular, plasma membrane	15.56	34.75
Zm00001d052058_P001	Maize	extracellular, plasma membrane	15.4	34.64
Solyc07g006480.2.1	Tomato	plasma membrane	35.56	34.3
Bra040380.1-P	Field mustard	extracellular	12.7	34.04
VIT_05s0094g01290.t01	Wine grape	mitochondrion	6.83	33.59
Bra006366.1-P	Field mustard	mitochondrion	16.83	32.62
CDX70708	Canola	extracellular, plasma membrane, vacuole	17.94	31.56
Zm00001d021202_P030	Maize	plastid	22.22	30.7
Solyc12g096710.1.1	Tomato	plasma membrane	36.98	28.87
KRH21660	Soybean	cytosol	6.83	27.04
Zm00001d006033_P032	Maize	plastid	25.08	25.16

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.10.1	Gene3D:3.30.200.20	Gene3D:3.80.10.10	UniProt:A0A1D6M4F7	ProteinID:AQK86014.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF07714	PFAM:PF08263	PFAM:PF13516	PFAM:PF13855
PFscan:PS50011	PANTHER:PTHR44101	PANTHER:PTHR44101:SF3	InterPro:Prot_kinase_dom	SUPFAM:SSF52058	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000221B8B0	EnsemblPlantsGene:Zm00001d038195	EnsemblPlants:Zm00001d038195_P001
EnsemblPlants:Zm00001d038195_T001	SEG:seg	:	:	:	:

Description

Probably inactive leucine-rich repeat receptor-like protein kinase

Coordinates

chr6:-:151255025..151256961

Molecular Weight (calculated)

68842.1 Da

IEP (calculated)

6.568

GRAVY (calculated)

0.023

Length

630 amino acids

Sequence
(BLAST)

001: MTDHFALGLG ALLLLLLSSS CFSSDLDVQC LRDVKQSVTD PTGILKSSWV FDNTSVGFIC KFPGVECWHP DENRVLALRL SNFGLQGPFP KGLKNCTSMT
101: TLDLSSNSFT GAIPSDIQQQ VPFLASLDLS YNGFSGGIPV LIYNITYLNT LNLQHNQLSG DIPGQFSALA RLQEFNVADN QLSGTIPSSL QKFPASNFAG
201: NDGLCGPPLG ECQASAKSKS TASIIGAVVG VVVVVIIGAI VVFFCLRRVP AKKAAKDEDD NKWAKSIKGT KTIKAITFLT KSNQELLGDI MIISIIIQVS
301: MFENPVSKMK LSDLMKATDE FSKENIIGTG RTGTMYRAVL PDGSFLAVKR LQDSQHSESQ FASEMKTLGQ VRHRNLVPLL GFCVAKKERL LVYKHMPLGS
401: LYDQLNKEEG SKMDWALRLR IGIGAAKGLA YLHHTCNPRV LHRNISSKCI LLDEDYEPKI SDFGLARLMN PIDTHLSTFV NGEFGDLGYV APEYARTLVA
501: TPKGDVYSFG VVLLELVTGE RPTHVSSAPE NFRGSLVEWI SHLSNNALLQ DAIDKSLVAK DADGELMQFL KVACSCTLAT PKERPTMFEV YQLLRAIGER
601: YHFTADDDLV LPPLSTDSDG VTLDELIVAK

Best Arabidopsis Sequence Match ( AT5G48380.1 )
(BLAST)

001: MMMGRLVFVI WLYNCLCLLL LSSLVDADQA NIDCLRTFKS QVEDPNRYLS TWVFGNETAG YICKFSGVTC WHDDENRVLS IKLSGYGLRG VFPPAVKLCA
101: DLTGLDLSRN NFSGPLPANI STLIPLVTIL DLSYNSFSGE IPMLISNITF LNTLMLQHNQ FTGTLPPQLA QLGRLKTFSV SDNRLVGPIP NFNQTLQFKQ
201: ELFANNLDLC GKPLDDCKSA SSSRGKVVII AAVGGLTAAA LVVGVVLFFY FRKLGAVRKK QDDPEGNRWA KSLKGQKGVK VFMFKKSVSK MKLSDLMKAT
301: EEFKKDNIIA TGRTGTMYKG RLEDGSLLMI KRLQDSQRSE KEFDAEMKTL GSVKNRNLVP LLGYCVANKE RLLMYEYMAN GYLYDQLHPA DEESFKPLDW
401: PSRLKIAIGT AKGLAWLHHS CNPRIIHRNI SSKCILLTAE FEPKISDFGL ARLMNPIDTH LSTFVNGEFG DFGYVAPEYS RTMVATPKGD VYSFGVVLLE
501: LVTGQKATSV TKVSEEKAEE ENFKGNLVEW ITKLSSESKL QEAIDRSLLG NGVDDEIFKV LKVACNCVLP EIAKQRPTMF EVYQLLRAIG ESYNFTADDD
601: ILIPSESGEG DFIEELIVAR

Arabidopsis Description

BIR1Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.