Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- endoplasmic reticulum 5
- plasma membrane 5
- vacuole 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05959 | Canola | extracellular, plasma membrane | 89.78 | 89.13 |
| Bra029968.1-P | Field mustard | extracellular | 90.51 | 88.89 |
| AT5G65830.1 | Thale cress | extracellular, plasma membrane | 81.02 | 79.57 |
| VIT_07s0151g00470.t01 | Wine grape | plasma membrane | 71.17 | 72.22 |
| PGSC0003DMT400093490 | Potato | extracellular | 70.07 | 71.91 |
| Solyc02g092040.1.1 | Tomato | extracellular | 69.34 | 71.16 |
| KRH28321 | Soybean | extracellular, plasma membrane | 65.33 | 66.54 |
| KRH77166 | Soybean | plasma membrane | 64.23 | 65.67 |
| GSMUA_Achr2P08610_001 | Banana | plasma membrane | 65.69 | 64.29 |
| GSMUA_Achr3P25790_001 | Banana | extracellular, plasma membrane, vacuole | 64.6 | 62.99 |
| GSMUA_Achr3P30680_001 | Banana | extracellular, plasma membrane | 65.33 | 62.37 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 62.04 | 61.82 |
| GSMUA_Achr7P27510_001 | Banana | extracellular, plasma membrane | 56.57 | 61.51 |
| Zm00001d052058_P001 | Maize | extracellular, plasma membrane | 62.41 | 61.07 |
| EES07661 | Sorghum | extracellular, plasma membrane | 62.77 | 60.35 |
| Zm00001d018344_P001 | Maize | extracellular, plasma membrane | 62.04 | 60.28 |
| TraesCS5B01G161200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 61.68 | 59.51 |
| TraesCS5D01G168900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 61.68 | 58.88 |
| HORVU0Hr1G012140.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 61.31 | 58.54 |
| TraesCS5A01G163900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 61.31 | 58.54 |
| Os09t0131200-01 | Rice | plasma membrane | 59.49 | 57.8 |
| GSMUA_Achr1P14260_001 | Banana | plastid | 63.5 | 57.24 |
| AT1G27190.1 | Thale cress | plasma membrane | 36.13 | 16.47 |
| AT3G28450.1 | Thale cress | plasma membrane | 36.13 | 16.36 |
| AT1G69990.1 | Thale cress | plasma membrane | 32.48 | 15.06 |
| AT5G48380.1 | Thale cress | plasma membrane | 29.2 | 12.9 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:824137 | UniProt:A0A178VI92 | ProteinID:AEE78586.1 | EMBL:AK228028 |
| ArrayExpress:AT3G49750 | EnsemblPlantsGene:AT3G49750 | RefSeq:AT3G49750 | TAIR:AT3G49750 | RefSeq:AT3G49750-TAIR-G | EnsemblPlants:AT3G49750.1 |
| TAIR:AT3G49750.1 | Symbol:AtRLP44 | EMBL:BT006422 | ProteinID:CAB66913.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | RefSeq:NP_190544.1 | ProteinID:OAP06137.1 |
| PFAM:PF13855 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PRINTS:PR00019 | PFscan:PS51450 | PANTHER:PTHR44839 | UniProt:Q9M2Y3 | SUPFAM:SSF52058 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI000009DF96 | SEG:seg | : | : | : |
Description
AtRLP44RLP44 [Source:UniProtKB/TrEMBL;Acc:A0A178VI92]
Coordinates
chr3:-:18450426..18451659
Molecular Weight (calculated)
29995.3 Da
IEP (calculated)
8.108
GRAVY (calculated)
0.015
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRSHRLLLL LLLIFQTAQR LTTADPNDEA CLKNLRQNLE DPASNLRNWT NSVFSNPCSG FTSYLPGATC NNGRIYKLSL TNLSLRGSIS PFLSNCTNLQ
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.