CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28450.1	CDX73678	AT3G51920.1	17360592
AT3G28450.1	CDX95314	AT3G51920.1	17360592
AT3G28450.1	CDY23174	AT3G51920.1	17360592
AT3G28450.1	CDY06478	AT4G14640.1	17360592
AT3G28450.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025334.1-P	Field mustard	plasma membrane	92.63	59.26
CDX86433	Canola	plasma membrane	84.74	57.5
CDY04020	Canola	plasma membrane	83.16	52.49
CDY47244	Canola	plasma membrane	82.11	51.91
AT3G28450.1	Thale cress	plasma membrane	82.11	51.57
Solyc02g087460.1.1	Tomato	plasma membrane	63.95	40.43
Zm00001d016331_P001	Maize	vacuole	23.68	40.18
PGSC0003DMT400003278	Potato	plasma membrane	63.42	40.1
VIT_14s0066g02250.t01	Wine grape	plasma membrane	64.47	39.97
Solyc02g067560.1.1	Tomato	golgi, plasma membrane, vacuole	62.63	39.47
PGSC0003DMT400017876	Potato	plasma membrane	62.63	38.89
CDY16228	Canola	plasma membrane	59.74	37.9
CDY14686	Canola	plasma membrane	59.47	37.86
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	43.68	35.47
CDY11627	Canola	plasma membrane	52.63	33.61
CDY38780	Canola	plasma membrane	52.89	33.5
Zm00001d021202_P030	Maize	plastid	38.95	32.46
Zm00001d006033_P032	Maize	plastid	45.0	27.23
CDX85334	Canola	plasma membrane	44.47	27.13
CDY48749	Canola	plasma membrane	43.42	26.48
CDY05685	Canola	plasma membrane	43.16	26.24
KRG93454	Soybean	mitochondrion	26.58	25.57
KRH18545	Soybean	plasma membrane	9.47	12.24
CDY16992	Canola	cytosol, plasma membrane, plastid	2.89	5.47
CDY18672	Canola	mitochondrion, plasma membrane	3.42	5.35
CDX81298	Canola	extracellular, plasma membrane	3.42	5.35
CDY38095	Canola	plasma membrane	3.68	5.28
CDY38092	Canola	plasma membrane	3.68	5.22
CDX85492	Canola	plasma membrane	3.68	5.22
CDX69430	Canola	extracellular	3.16	5.02
CDY05959	Canola	extracellular, plasma membrane	3.16	4.35
KRH18546	Soybean	extracellular	2.11	3.42
CDY07991	Canola	plasma membrane	1.32	1.93
CDX70708	Canola	extracellular, plasma membrane, vacuole	1.58	1.68
CDX85197	Canola	plastid	0.79	1.35

Protein Annotations

Gene3D:1.10.510.10	Gene3D:3.30.200.20	MapMan:50.2.7	GO:A0A078DD22	EnsemblPlants:CDX85198	ProteinID:CDX85198
ProteinID:CDX85198.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00142815001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
PFAM:PF07714	PFscan:PS50011	PANTHER:PTHR44101	PANTHER:PTHR44101:SF2	InterPro:Prot_kinase_dom	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	TMHMM:TMhelix	UniParc:UPI0004EACE77	SEG:seg	:	:

Description

BnaC07g25090D

Coordinates

chrLK031841:+:215991..217133

Molecular Weight (calculated)

42488.4 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.037

Length

380 amino acids

Sequence
(BLAST)

001: MSVRFSGFYK KNLAIIIAAG VFGAAASILL AFVVYLKRRR TTSSLTEGGL AQRLRIHKLV QVSLFQKPLV KVKLGDLMSA TNHFSSENII VTTRTGTTYK
101: AVFLDGSALA VKHLSAKCKL EEMEFRYEMN RLWELRHPNL APLLGFCAVE EERFLVYKYM SKGTLKSLLE EEDVELDWST RFRIGLGAAR GLAWLHHGCR
201: PPILHQNICS SVILVDEDFD ARIVDSGLAR LMVRSDNNDG CFMTGDLGEF GYVASEYFTT MVASLKGDVY GLGVVLLELA TGVKALGGEG FKGSLVDWVK
301: QLESSGRMAD AFDEGIRGKG HDEEILKFVE VACHCVAPRP KERWTMFQAY RSLKAMAEKQ GYSFTEQDDD FPLIFDTQEN

Best Arabidopsis Sequence Match ( AT1G27190.1 )
(BLAST)

001: MKKIFITLLW LLFISSFLCS SSSAEDDVLC LQGLKNSLID PSSRLSSWSF PNSSASSICK LTGVSCWNEK ENRIISLQLQ SMQLAGEIPE SLKLCRSLQS
101: LDLSGNDLSG SIPSQICSWL PYLVTLDLSG NKLGGSIPTQ IVECKFLNAL ILSDNKLSGS IPSQLSRLDR LRRLSLAGND LSGTIPSELA RFGGDDFSGN
201: NGLCGKPLSR CGALNGRNLS IIIVAGVLGA VGSLCVGLVI FWWFFIREGS RKKKGYGAGK SKDDSDWIGL LRSHKLVQVT LFQKPIVKIK LGDLMAATNN
301: FSSGNIDVSS RTGVSYKADL PDGSALAVKR LSACGFGEKQ FRSEMNKLGE LRHPNLVPLL GYCVVEDERL LVYKHMVNGT LFSQLHNGGL CDAVLDWPTR
401: RAIGVGAAKG LAWLHHGCQP PYLHQFISSN VILLDDDFDA RITDYGLAKL VGSRDSNDSS FNNGDLGELG YVAPEYSSTM VASLKGDVYG FGIVLLELVT
501: GQKPLSVING VEGFKGSLVD WVSQYLGTGR SKDAIDRSIC DKGHDEEILQ FLKIACSCVV SRPKERPTMI QVYESLKNMA DKHGVSEHYD EFPLVFNKQE
601: A

Arabidopsis Description

Probable inactive receptor kinase At1g27190 [Source:UniProtKB/Swiss-Prot;Acc:O04567]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.