Factsheet for Bra025334.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 6
extracellular 3
endoplasmic reticulum 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28450.1	Bra000214.1-P	AT2G41090.1	17360592
AT3G28450.1	Bra000214.1-P	AT2G41100.1	17360592
AT3G28450.1	Bra018296.1-P	AT3G51920.1	17360592
AT3G28450.1	Bra033467.1-P	AT3G51920.1	17360592
AT3G28450.1	Bra039723.1-P	AT4G14640.1	17360592
AT3G28450.1	Bra002368.1-P	AT5G21274.1	17360592
AT3G28450.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86433	Canola	plasma membrane	94.28	100.0
CDX85198	Canola	golgi, plasma membrane	59.26	92.63
Bra033046.1-P	Field mustard	cytosol	79.12	81.88
AT3G28450.1	Thale cress	plasma membrane	81.99	80.5
VIT_14s0066g02250.t01	Wine grape	plasma membrane	62.12	60.2
Solyc02g067560.1.1	Tomato	golgi, plasma membrane, vacuole	60.77	59.87
PGSC0003DMT400017876	Potato	plasma membrane	61.45	59.64
Solyc02g087460.1.1	Tomato	plasma membrane	58.92	58.24
PGSC0003DMT400003278	Potato	plasma membrane	58.59	57.9
Bra024650.1-P	Field mustard	plasma membrane	56.4	56.02
KRG93454	Soybean	mitochondrion	36.36	54.68
CDX85197	Canola	plastid	20.03	53.6
KRH18545	Soybean	plasma membrane	25.42	51.36
Bra016244.1-P	Field mustard	plasma membrane	50.67	50.5
KRH18546	Soybean	extracellular	18.01	45.73
Bra038824.1-P	Field mustard	cytosol	25.25	45.32
Bra037490.1-P	Field mustard	plastid	33.5	42.52
Bra020705.1-P	Field mustard	plasma membrane	38.55	41.49
Zm00001d016331_P001	Maize	vacuole	15.15	40.18
Bra037831.1-P	Field mustard	extracellular, plasma membrane, vacuole	15.99	34.8
Bra001255.1-P	Field mustard	plasma membrane	14.48	33.2
Bra029968.1-P	Field mustard	extracellular	15.32	32.62
Zm00001d021202_P030	Maize	plastid	24.75	32.24
Bra040380.1-P	Field mustard	extracellular	11.95	30.21
Bra006366.1-P	Field mustard	mitochondrion	15.49	28.31
Zm00001d006033_P032	Maize	plastid	29.63	28.03

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.10.1	Gene3D:3.30.200.20	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra025334	EnsemblPlants:Bra025334.1
EnsemblPlants:Bra025334.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M4E978	PFAM:PF00560	PFAM:PF07714	PFAM:PF08263
PRINTS:PR00019	PFscan:PS50011	PANTHER:PTHR44101	PANTHER:PTHR44101:SF2	InterPro:Prot_kinase_dom	SUPFAM:SSF52058
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000253FBC0	SEG:seg

Description

AT3G28450 (E=5e-272) | leucine-rich repeat transmembrane protein kinase, putative

Coordinates

chrA06:-:22109253..22111037

Molecular Weight (calculated)

65669.0 Da

IEP (calculated)

6.578

GRAVY (calculated)

-0.061

Length

594 amino acids

Sequence
(BLAST)

001: MEISSKPRKL LPFFIFFLCY SSPALAADED DIRCLRGIHT SLTDPNGLLK SWNFANTTVG FLCNFVGVSC WNNQENRVLN LELRDMSLSG QIPDSLRFCG
101: SLQKLDLSNN RLTGTIPRQL CSWLPFLVSL DLSNNQLNGE IPPELAECRF VNSLVLSDNR LSGLIPVQLS SLGRLVTFSV SNNHLTGRIP SFFTSPSYSP
201: DDFNGNKGLC GRPLSSPCGG LSKKNLAIII AAGVFGAAAS ILLAFVVYLK RRTTTSSLTE GGLAQRLRIH KLVQVSLFQK PLVKVKLGDL MSATNHFSSE
301: NIIVKTRTGT TYKAVLPDGS ALAVKHLSKC KLEEREFGYE MNRLWELRHP NLAPLLGFCA VEEERFLVYK YMSNGTLRSL LEEEEDVELD WSTRFRIGLG
401: AARGLAWLHH GCRPPILHQN VCSSVILIDE DFDARLVDSG LARLMVRSDN NEGSFMTGGL GEFGYVAPEY STTMVASLKG DVYALGVVLI ELATGLKALG
501: GGEGFKGSLV DWVKQLESSG RMADALDEGI RGKGHDEEIL KFVEVACHCV ATNPKERWTM FQAYRSLKAM AEKQGYSFTE QDDDFPLIFD TQEN

Best Arabidopsis Sequence Match ( AT3G28450.1 )
(BLAST)

001: MKEIGSKPRK LLPLCFIIFL CFCSSVMAAD EDDIRCLRGL KASLTDPQNA LKSWNFDNTT LGFLCNFVGV SCWNNQENRV INLELRDMGL SGKIPDSLQY
101: CASLQKLDLS SNRLSGNIPT ELCNWLPFLV SLDLSNNELN GEIPPDLAKC SFVNSLVLSD NRLSGQIPVQ FSALGRLGRF SVANNDLSGR IPVFFSSPSY
201: SSDDFSGNKG LCGRPLSSSC GGLSKKNLGI IIAAGVFGAA ASMLLAFGIW WYYHLKWTRR RRSGLTEVGV SGLAQRLRSH KLTQVSLFQK PLVKVKLGDL
301: MAATNNFNSE NIIVSTRTGT TYKALLPDGS ALAVKHLSTC KLGEREFRYE MNQLWELRHS NLAPLLGFCV VEEEKFLVYK YMSNGTLHSL LDSNRGELDW
401: STRFRIGLGA ARGLAWLHHG CRPPILHQNI CSSVILIDED FDARIIDSGL ARLMVPSDNN ESSFMTGDLG EFGYVAPEYS TTMLASLKGD VYGLGVVLLE
501: LATGLKAVGG EGFKGSLVDW VKQLESSGRI AETFDENIRG KGHDEEISKF VEIALNCVSS RPKERWSMFQ AYQSLKAIAE KQGYSFSEQD DDFPLIFDTQ
601: ENEKV

Arabidopsis Description

BIR2Inactive LRR receptor-like serine/threonine-protein kinase BIR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.