CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28450.1	CDX73678	AT3G51920.1	17360592
AT3G28450.1	CDX95314	AT3G51920.1	17360592
AT3G28450.1	CDY23174	AT3G51920.1	17360592
AT3G28450.1	CDY06478	AT4G14640.1	17360592
AT3G28450.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07991	Canola	plasma membrane	31.53	27.03
KRH18545	Soybean	plasma membrane	35.14	26.53
KRH18546	Soybean	extracellular	27.93	26.5
CDY05959	Canola	extracellular, plasma membrane	30.63	24.64
CDY18672	Canola	mitochondrion, plasma membrane	26.58	24.28
CDX81298	Canola	extracellular, plasma membrane	26.58	24.28
CDX85492	Canola	plasma membrane	28.38	23.51
CDY38095	Canola	plasma membrane	27.93	23.4
CDX69430	Canola	extracellular	24.32	22.59
CDY38092	Canola	plasma membrane	27.03	22.39
CDX86433	Canola	plasma membrane	53.6	21.25
Bra025334.1-P	Field mustard	plasma membrane	53.6	20.03
KRG93454	Soybean	mitochondrion	34.23	19.24
CDY04020	Canola	plasma membrane	50.9	18.77
CDY47244	Canola	plasma membrane	48.65	17.97
AT3G28450.1	Thale cress	plasma membrane	48.2	17.69
CDX70708	Canola	extracellular, plasma membrane, vacuole	27.48	17.04
CDY16992	Canola	cytosol, plasma membrane, plastid	14.41	15.92
VIT_14s0066g02250.t01	Wine grape	plasma membrane	40.54	14.68
CDY16228	Canola	plasma membrane	37.84	14.02
CDY14686	Canola	plasma membrane	36.94	13.74
PGSC0003DMT400017876	Potato	plasma membrane	37.84	13.73
Solyc02g067560.1.1	Tomato	golgi, plasma membrane, vacuole	36.94	13.6
PGSC0003DMT400003278	Potato	plasma membrane	36.04	13.31
Solyc02g087460.1.1	Tomato	plasma membrane	35.59	13.14
CDY38780	Canola	plasma membrane	33.33	12.33
CDY11627	Canola	plasma membrane	32.88	12.27
CDY05685	Canola	plasma membrane	30.63	10.88
CDY48749	Canola	plasma membrane	29.73	10.59
CDX85334	Canola	plasma membrane	29.73	10.59
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	15.77	7.48
Zm00001d006033_P032	Maize	plastid	4.05	1.43
Zm00001d016331_P001	Maize	vacuole	0.9	0.89
CDX85198	Canola	golgi, plasma membrane	1.35	0.79
Zm00001d021202_P030	Maize	plastid	0.9	0.44

Protein Annotations

EnsemblPlants:CDX85197	EnsemblPlantsGene:GSBRNA2T00142814001	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44101
PANTHER:PTHR44101:SF2	ProteinID:CDX85197	ProteinID:CDX85197.1	SEG:seg	SUPFAM:SSF52058	UniParc:UPI0004EEEA56
MapMan:35.1	:	:	:	:	:

Description

BnaC07g25080D

Coordinates

chrLK031841:+:209649..210406

Molecular Weight (calculated)

25259.8 Da

IEP (calculated)

11.976

GRAVY (calculated)

-0.508

Length

222 amino acids

Sequence
(BLAST)

001: MEIISNPKAA SFLHHLPPLL LPCSSSRRRR HKMLTRNPRL PRRPSRRSQI MELREHHCRI PLQLRRRLLL EQPRKQSPQP RAQRHVSLRS NPRLSPKLDL
101: SNNRLSGTIP RRLCSWLPFL VSLDLSNTQL NGEIPPELAE CRFVNSLVLS DNRLSGQIPV QLSSLGRLVT FSVSNNDLTG RIPSFFTSPS YSTDDFNGNK
201: GLCGRPLSSP CGGLSKKCWI HL

Best Arabidopsis Sequence Match ( AT3G28450.1 )
(BLAST)

001: MKEIGSKPRK LLPLCFIIFL CFCSSVMAAD EDDIRCLRGL KASLTDPQNA LKSWNFDNTT LGFLCNFVGV SCWNNQENRV INLELRDMGL SGKIPDSLQY
101: CASLQKLDLS SNRLSGNIPT ELCNWLPFLV SLDLSNNELN GEIPPDLAKC SFVNSLVLSD NRLSGQIPVQ FSALGRLGRF SVANNDLSGR IPVFFSSPSY
201: SSDDFSGNKG LCGRPLSSSC GGLSKKNLGI IIAAGVFGAA ASMLLAFGIW WYYHLKWTRR RRSGLTEVGV SGLAQRLRSH KLTQVSLFQK PLVKVKLGDL
301: MAATNNFNSE NIIVSTRTGT TYKALLPDGS ALAVKHLSTC KLGEREFRYE MNQLWELRHS NLAPLLGFCV VEEEKFLVYK YMSNGTLHSL LDSNRGELDW
401: STRFRIGLGA ARGLAWLHHG CRPPILHQNI CSSVILIDED FDARIIDSGL ARLMVPSDNN ESSFMTGDLG EFGYVAPEYS TTMLASLKGD VYGLGVVLLE
501: LATGLKAVGG EGFKGSLVDW VKQLESSGRI AETFDENIRG KGHDEEISKF VEIALNCVSS RPKERWSMFQ AYQSLKAIAE KQGYSFSEQD DDFPLIFDTQ
601: ENEKV

Arabidopsis Description

BIR2Inactive LRR receptor-like serine/threonine-protein kinase BIR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.