Factsheet for PGSC0003DMT400041342

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010020.2.1	Tomato	cytosol	96.27	96.27
VIT_01s0011g02470.t01	Wine grape	cytosol	78.26	77.78
Bra017355.1-P	Field mustard	cytosol	75.78	75.78
CDY04172	Canola	cytosol	75.78	75.78
AT3G25600.1	Thale cress	cytosol	75.78	75.78
Bra025149.1-P	Field mustard	cytosol	75.78	75.31
CDY48076	Canola	cytosol	75.78	75.31
CDY51605	Canola	cytosol	75.78	75.31
CDY59874	Canola	cytosol	75.16	75.16
KRH07628	Soybean	cytosol	72.67	73.12
PGSC0003DMT400063261	Potato	cytosol	70.81	70.81
PGSC0003DMT400019291	Potato	cytosol	50.93	70.69
GSMUA_Achr9P21860_001	Banana	cytosol, mitochondrion	67.7	66.87
GSMUA_Achr1P25220_001	Banana	cytosol	67.7	66.87
GSMUA_Achr8P29750_001	Banana	cytosol, mitochondrion	66.46	65.24
TraesCS1A01G416100.1	Wheat	cytosol	62.73	58.72
Os05t0577500-01	Rice	cytosol, mitochondrion	62.73	58.38
TraesCS1B01G446400.1	Wheat	plastid	62.73	57.71
Zm00001d039110_P001	Maize	cytosol	61.49	57.56
Zm00001d053188_P001	Maize	cytosol	38.51	56.88
EES19997	Sorghum	plastid	60.87	52.69
PGSC0003DMT400008152	Potato	cytosol	52.17	51.53
PGSC0003DMT400038352	Potato	cytosol	51.55	50.92
Zm00001d044411_P001	Maize	plastid	60.87	41.88
EES03239	Sorghum	plastid	60.87	41.53
PGSC0003DMT400046278	Potato	cytosol	19.25	40.26
HORVU3Hr1G052770.1	Barley	cytosol	60.87	39.68
PGSC0003DMT400058435	Potato	cytosol	36.02	38.93
PGSC0003DMT400070437	Potato	cytosol	36.02	38.93
PGSC0003DMT400018569	Potato	cytosol	36.02	38.93
TraesCS3D01G217900.1	Wheat	cytosol	61.49	38.82
TraesCS3A01G216300.1	Wheat	cytosol	61.49	38.82
PGSC0003DMT400042062	Potato	cytosol	36.02	38.67
Os01t0604500-01	Rice	cytosol	59.63	38.55
TraesCS3B01G246100.1	Wheat	cytosol	60.87	38.43
PGSC0003DMT400054299	Potato	cytosol	26.09	37.17
PGSC0003DMT400083971	Potato	extracellular	33.54	36.24
PGSC0003DMT400034833	Potato	cytosol	33.54	35.29
PGSC0003DMT400083727	Potato	cytosol	31.68	34.69
PGSC0003DMT400014123	Potato	mitochondrion	25.47	33.61
PGSC0003DMT400097662	Potato	cytosol, mitochondrion	31.06	28.9
PGSC0003DMT400010295	Potato	cytosol, mitochondrion	29.19	27.98
PGSC0003DMT400070433	Potato	cytosol	25.47	27.89

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102594874	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1BB85	PFAM:PF13499
EnsemblPlantsGene:PGSC0003DMG400016011	PGSC:PGSC0003DMG400016011	EnsemblPlants:PGSC0003DMT400041342	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR44256
PANTHER:PTHR44256:SF6	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002963567	RefSeq:XP_006367528.1	SEG:seg

Description

Calmodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400016011]

Coordinates

chr00:-:23448432..23449412

Molecular Weight (calculated)

17666.0 Da

IEP (calculated)

4.011

GRAVY (calculated)

-0.160

Length

161 amino acids

Sequence
(BLAST)

001: MASLQSDEQL KQLKEIFGRF DLDHDGSLTQ LELAALLRAL GLKPTGDQIH TLLANMDNNG NGFIEFDELV NAIMPDMNAE ILINQEQLME VFRSFDRDGN
101: GYITAAELAG SMAKMGRPLT YKELSDMMQE ADTNGDGVIS FNEFANIMGR SAADVLGLTV S

Best Arabidopsis Sequence Match ( AT3G25600.1 )
(BLAST)

001: MASTKPTDQI KQLKDIFARF DMDKDGSLTQ LELAALLRSL GIKPRGDQIS LLLNQIDRNG NGSVEFDELV VAILPDINEE VLINQEQLME VFRSFDRDGN
101: GSITAAELAG SMAKMGHPLT YRELTEMMTE ADSNGDGVIS FNEFSHIMAK SAADFLGLTA S

Arabidopsis Description

CML16Probable calcium-binding protein CML16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LI84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.