Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- plasma membrane 3
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G16410.1 | PGSC0003DMT400014123 | AT2G41090.1 | 17360592 |
| AT4G16410.1 | PGSC0003DMT400018569 | AT2G41090.1 | 17360592 |
| AT4G16410.1 | PGSC0003DMT400046278 | AT2G41090.1 | 17360592 |
| AT4G16410.1 | PGSC0003DMT400054299 | AT2G41090.1 | 17360592 |
| AT4G16410.1 | PGSC0003DMT400058435 | AT2G41090.1 | 17360592 |
| AT4G16410.1 | PGSC0003DMT400070437 | AT2G41090.1 | 17360592 |
| AT4G16410.1 | PGSC0003DMT400097662 | AT2G41090.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g012640.1.1 | Tomato | mitochondrion, plasma membrane | 93.26 | 93.26 |
| Bra038457.1-P | Field mustard | extracellular, plastid, vacuole | 38.76 | 48.25 |
| Bra012722.1-P | Field mustard | plastid | 47.75 | 47.22 |
| CDX90527 | Canola | plastid | 47.75 | 47.22 |
| CDY09697 | Canola | plastid | 47.19 | 46.41 |
| KRH01971 | Soybean | plasma membrane, plastid | 42.13 | 44.91 |
| AT4G16410.1 | Thale cress | plastid | 46.63 | 44.86 |
| KRH51183 | Soybean | plastid | 43.26 | 44.25 |
| GSMUA_Achr6P24520_001 | Banana | mitochondrion | 44.38 | 43.41 |
| CDY32241 | Canola | endoplasmic reticulum, extracellular, plastid | 23.03 | 34.45 |
| Zm00001d045742_P001 | Maize | extracellular | 37.64 | 34.18 |
| Zm00001d037361_P001 | Maize | mitochondrion | 35.39 | 32.81 |
| EER88230 | Sorghum | mitochondrion | 35.96 | 32.32 |
| Os07t0607200-01 | Rice | plastid | 34.83 | 31.63 |
| VIT_00s1543g00010.t01 | Wine grape | plasma membrane | 48.31 | 30.82 |
| VIT_00s0194g00160.t01 | Wine grape | plasma membrane | 47.75 | 30.47 |
| TraesCS7A01G160300.1 | Wheat | plastid | 37.64 | 21.75 |
| TraesCS7D01G161000.1 | Wheat | plastid | 37.08 | 21.36 |
| TraesCS7B01G065200.1 | Wheat | plastid | 36.52 | 20.19 |
| HORVU7Hr1G033500.6 | Barley | plastid | 36.52 | 18.73 |
| CDY34464 | Canola | cytosol | 32.58 | 17.85 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400034588 | EnsemblPlantsGene:PGSC0003DMG400013294 | EntrezGene:102587938 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Uncharacterised_Ycf33 | PANTHER:PTHR36049 | PFAM:PF05421 | PGSC:PGSC0003DMG400013294 | RefSeq:XP_006352329.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000295C0F9 | UniProt:M1B0Y9 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013294]
Coordinates
chr11:-:302018..302907
Molecular Weight (calculated)
20059.8 Da
IEP (calculated)
9.638
GRAVY (calculated)
0.174
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLQLHFQHC NLPLLIQLKH KSPIKNSRFP YGKREIYQVA SEKRSIVKPL ALEILPKSKK LSGSEISKER SNLLVLGAVS VGVVLFLMGF DDKNQALALG
101: PEGPLMEEFW ENMRRYGLYA LTVSTGVLWA VFQPIYELLK NPISAILILT IMGGSFYIVS QVVSAMVGVT DFSYDYNY
101: PEGPLMEEFW ENMRRYGLYA LTVSTGVLWA VFQPIYELLK NPISAILILT IMGGSFYIVS QVVSAMVGVT DFSYDYNY
001: MTMMSLPKMR LSCLQPHLHF TSSRSIAAAL AFPSSSIRNR TSCLVRCGSA RRRLTTKSSR NSKLERAQPP PLGLERHWRY AVVGGVSVGL MMVLVLGMDA
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZK4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.