Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 3
- nucleus 1
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000214.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G16410.1 | Bra000214.1-P | AT2G41090.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32241 | Canola | endoplasmic reticulum, extracellular, plastid | 69.23 | 83.19 |
| Bra012722.1-P | Field mustard | plastid | 74.13 | 58.89 |
| AT4G16410.1 | Thale cress | plastid | 75.52 | 58.38 |
| KRH01971 | Soybean | plasma membrane, plastid | 49.65 | 42.52 |
| KRH51183 | Soybean | plastid | 49.65 | 40.8 |
| PGSC0003DMT400034588 | Potato | mitochondrion, plasma membrane | 48.25 | 38.76 |
| Solyc11g012640.1.1 | Tomato | mitochondrion, plasma membrane | 47.55 | 38.2 |
| GSMUA_Achr6P24520_001 | Banana | mitochondrion | 47.55 | 37.36 |
| Zm00001d037361_P001 | Maize | mitochondrion | 38.46 | 28.65 |
| EER88230 | Sorghum | mitochondrion | 38.46 | 27.78 |
| Zm00001d045742_P001 | Maize | extracellular | 37.76 | 27.55 |
| VIT_00s1543g00010.t01 | Wine grape | plasma membrane | 48.95 | 25.09 |
| Os07t0607200-01 | Rice | plastid | 34.27 | 25.0 |
| VIT_00s0194g00160.t01 | Wine grape | plasma membrane | 48.25 | 24.73 |
| TraesCS7D01G161000.1 | Wheat | plastid | 43.36 | 20.06 |
| TraesCS7A01G160300.1 | Wheat | plastid | 41.96 | 19.48 |
| TraesCS7B01G065200.1 | Wheat | plastid | 41.26 | 18.32 |
| HORVU7Hr1G033500.6 | Barley | plastid | 41.96 | 17.29 |
Protein Annotations
| EnsemblPlants:Bra038457.1 | EnsemblPlants:Bra038457.1-P | EnsemblPlantsGene:Bra038457 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Uncharacterised_Ycf33 | PANTHER:PTHR36049 | PFAM:PF05421 | TMHMM:TMhelix | UniParc:UPI00025446E1 | UniProt:M4FBJ1 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT4G16410 (E=3e-043) | unknown protein
Coordinates
chrA01:+:11101269..11101816
Molecular Weight (calculated)
15801.7 Da
IEP (calculated)
5.685
GRAVY (calculated)
0.613
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMMMSLPKM KISCLHPQVH LSSSSLLAAT EVLPSLSIRN RTSYLVRLVM ALVLGADAER AMALGPEGPL MEEFWDNVRR YGLYALTVST GALSAVFEPI
101: FELLKNQFSA VLILIILGGS FYILSQVVSS MVGVNEFVYE YGY
101: FELLKNQFSA VLILIILGGS FYILSQVVSS MVGVNEFVYE YGY
001: MTMMSLPKMR LSCLQPHLHF TSSRSIAAAL AFPSSSIRNR TSCLVRCGSA RRRLTTKSSR NSKLERAQPP PLGLERHWRY AVVGGVSVGL MMVLVLGMDA
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZK4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.