Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
22192489
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037361_P001 | Maize | mitochondrion | 77.04 | 78.65 |
| EER88230 | Sorghum | mitochondrion | 71.43 | 70.71 |
| Os07t0607200-01 | Rice | plastid | 54.08 | 54.08 |
| GSMUA_Achr6P24520_001 | Banana | mitochondrion | 38.78 | 41.76 |
| KRH01971 | Soybean | plasma membrane, plastid | 33.67 | 39.52 |
| KRH51183 | Soybean | plastid | 34.69 | 39.08 |
| CDX90527 | Canola | plastid | 35.2 | 38.33 |
| Bra012722.1-P | Field mustard | plastid | 35.2 | 38.33 |
| CDY09697 | Canola | plastid | 35.2 | 38.12 |
| Bra038457.1-P | Field mustard | extracellular, plastid, vacuole | 27.55 | 37.76 |
| PGSC0003DMT400034588 | Potato | mitochondrion, plasma membrane | 34.18 | 37.64 |
| Solyc11g012640.1.1 | Tomato | mitochondrion, plasma membrane | 34.18 | 37.64 |
| AT4G16410.1 | Thale cress | plastid | 31.63 | 33.51 |
| TraesCS7A01G160300.1 | Wheat | plastid | 44.39 | 28.25 |
| TraesCS7D01G161000.1 | Wheat | plastid | 43.88 | 27.83 |
| TraesCS7B01G065200.1 | Wheat | plastid | 43.37 | 26.4 |
| HORVU7Hr1G033500.6 | Barley | plastid | 45.41 | 25.65 |
| CDY32241 | Canola | endoplasmic reticulum, extracellular, plastid | 15.31 | 25.21 |
| VIT_00s0194g00160.t01 | Wine grape | plasma membrane | 33.67 | 23.66 |
| VIT_00s1543g00010.t01 | Wine grape | plasma membrane | 33.16 | 23.3 |
| CDY34464 | Canola | cytosol | 29.08 | 17.54 |
Protein Annotations
| EnsemblPlants:Zm00001d045742_P001 | EnsemblPlants:Zm00001d045742_T001 | EnsemblPlantsGene:Zm00001d045742 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Uncharacterised_Ycf33 | PANTHER:PTHR36049 | PFAM:PF05421 | ProteinID:AQL03090.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000220D68F | UniProt:K7VTI9 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr9:+:36335126..36335716
Molecular Weight (calculated)
20592.1 Da
IEP (calculated)
8.493
GRAVY (calculated)
0.289
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQLSLLHRA FHLHLLSPER GHGLTAAVIR VRLPSSQHTP RQHAKRLLAV APHESIAAAT EESSRPRQEL AAAGNKNDGG GGGGRTCALP TWALIGGITA
101: GVAVALALSA GAGPALALGP EGPLVEEFWD NMRRYALYVV TVSTGVAYTV LQPIVELLKN PITALLIVAV LAGSGFLVSQ VLNAMVGNSD FIYMYE
101: GVAVALALSA GAGPALALGP EGPLVEEFWD NMRRYALYVV TVSTGVAYTV LQPIVELLKN PITALLIVAV LAGSGFLVSQ VLNAMVGNSD FIYMYE
001: MTMMSLPKMR LSCLQPHLHF TSSRSIAAAL AFPSSSIRNR TSCLVRCGSA RRRLTTKSSR NSKLERAQPP PLGLERHWRY AVVGGVSVGL MMVLVLGMDA
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZK4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.