Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- endoplasmic reticulum 3
- extracellular 3
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038457.1-P | Field mustard | extracellular, plastid, vacuole | 83.19 | 69.23 |
| AT4G16410.1 | Thale cress | plastid | 62.18 | 40.0 |
| CDX90527 | Canola | plastid | 57.98 | 38.33 |
| CDY09697 | Canola | plastid | 57.98 | 38.12 |
| KRH01971 | Soybean | plasma membrane, plastid | 35.29 | 25.15 |
| KRH51183 | Soybean | plastid | 35.29 | 24.14 |
| PGSC0003DMT400034588 | Potato | mitochondrion, plasma membrane | 34.45 | 23.03 |
| GSMUA_Achr6P24520_001 | Banana | mitochondrion | 34.45 | 22.53 |
| Solyc11g012640.1.1 | Tomato | mitochondrion, plasma membrane | 32.77 | 21.91 |
| Zm00001d037361_P001 | Maize | mitochondrion | 25.21 | 15.62 |
| VIT_00s1543g00010.t01 | Wine grape | plasma membrane | 36.13 | 15.41 |
| Zm00001d045742_P001 | Maize | extracellular | 25.21 | 15.31 |
| EER88230 | Sorghum | mitochondrion | 25.21 | 15.15 |
| VIT_00s0194g00160.t01 | Wine grape | plasma membrane | 35.29 | 15.05 |
| Os07t0607200-01 | Rice | plastid | 21.85 | 13.27 |
| TraesCS7D01G161000.1 | Wheat | plastid | 32.77 | 12.62 |
| CDY34464 | Canola | cytosol | 33.61 | 12.31 |
| TraesCS7A01G160300.1 | Wheat | plastid | 31.09 | 12.01 |
| TraesCS7B01G065200.1 | Wheat | plastid | 30.25 | 11.18 |
| HORVU7Hr1G033500.6 | Barley | plastid | 31.09 | 10.66 |
Protein Annotations
| EnsemblPlants:CDY32241 | EnsemblPlantsGene:GSBRNA2T00051681001 | GO:A0A078H358 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36049 | ProteinID:CDY32241 | ProteinID:CDY32241.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE530D |
| UniProt:A0A078H358 | MapMan:35.2 | : | : | : | : |
Description
BnaA01g17430DBnaA01g17430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H358]
Coordinates
chrLK032290:-:212307..212851
Molecular Weight (calculated)
12867.9 Da
IEP (calculated)
8.469
GRAVY (calculated)
0.471
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSLPKMKTF CLHPQVHLSS SSLLAATEAL PSLSIRNRTS YLVRLVMALV LGADAERAMA LGPEAREHSP LSLSPSLNSS RPPISAVLIL IILGGSFYIL
101: SQVVSSMVGV NEFVYEYGY
101: SQVVSSMVGV NEFVYEYGY
001: MTMMSLPKMR LSCLQPHLHF TSSRSIAAAL AFPSSSIRNR TSCLVRCGSA RRRLTTKSSR NSKLERAQPP PLGLERHWRY AVVGGVSVGL MMVLVLGMDA
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZK4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.