Factsheet for VIT_00s0194g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16410.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT4G16410.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1543g00010.t01	Wine grape	plasma membrane	99.28	99.28
Solyc11g012640.1.1	Tomato	mitochondrion, plasma membrane	30.82	48.31
Bra038457.1-P	Field mustard	extracellular, plastid, vacuole	24.73	48.25
PGSC0003DMT400034588	Potato	mitochondrion, plasma membrane	30.47	47.75
Bra012722.1-P	Field mustard	plastid	29.75	46.11
CDX90527	Canola	plastid	29.75	46.11
CDY09697	Canola	plastid	29.75	45.86
KRH01971	Soybean	plasma membrane, plastid	27.24	45.51
AT4G16410.1	Thale cress	plastid	29.39	44.32
GSMUA_Achr6P24520_001	Banana	mitochondrion	28.67	43.96
KRH51183	Soybean	plastid	26.88	43.1
CDY32241	Canola	endoplasmic reticulum, extracellular, plastid	15.05	35.29
Zm00001d037361_P001	Maize	mitochondrion	23.66	34.38
Zm00001d045742_P001	Maize	extracellular	23.66	33.67
Os07t0607200-01	Rice	plastid	22.58	32.14
EER88230	Sorghum	mitochondrion	22.58	31.82
TraesCS7A01G160300.1	Wheat	plastid	24.73	22.4
TraesCS7D01G161000.1	Wheat	plastid	24.73	22.33
TraesCS7B01G065200.1	Wheat	plastid	24.73	21.43
HORVU7Hr1G033500.6	Barley	plastid	24.73	19.88
CDY34464	Canola	cytosol	22.58	19.38

Protein Annotations

EntrezGene:100254484	wikigene:100254484	MapMan:35.2	EMBL:AM423704	ProteinID:CAN73304	ProteinID:CAN73304.1
ProteinID:CBI25744	ProteinID:CBI25744.3	UniProt:D7T5G1	EMBL:FN595527	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100254484	wikigene:LOC100254484	PFAM:PF05421	PANTHER:PTHR36049	TMHMM:TMhelix
UniParc:UPI0001BE2CB0	InterPro:Uncharacterised_Ycf33	ArrayExpress:VIT_00s0194g00160	EnsemblPlantsGene:VIT_00s0194g00160	EnsemblPlants:VIT_00s0194g00160.t01	RefSeq:XP_002268164
RefSeq:XP_002268164.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:10656114..10656971

Molecular Weight (calculated)

30752.1 Da

IEP (calculated)

7.366

GRAVY (calculated)

-0.013

Length

279 amino acids

Sequence
(BLAST)

001: MNARLGAGVE EAMDPIQFFS RARVEWIYMG LAEDYTWSFG LTLGPLSTVE DKAWTNQTHR SHPPTHPHSE AQQQNHLRLE SGAQEHIKEM KASALKFQSH
101: IPSPTNLPTP TANPLFLIPF KPRSSLNHPA KPSSVSLPSR GHINKPLVSS GLTPRSQKPS KEEFCQVSAN GCSRFVMIGA VSVGVVLLLM GVDEHKALAL
201: GPEGPLMEEF WDNVRRYALY FLTVSTGAVY TVFVPILELL KNPISAILVL VIFGGSLFIV SQVISAMVGV TEFSYDYSY

Best Arabidopsis Sequence Match ( AT4G16410.1 )
(BLAST)

001: MTMMSLPKMR LSCLQPHLHF TSSRSIAAAL AFPSSSIRNR TSCLVRCGSA RRRLTTKSSR NSKLERAQPP PLGLERHWRY AVVGGVSVGL MMVLVLGMDA
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZK4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.