Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88230 | Sorghum | mitochondrion | 56.63 | 56.06 |
| Zm00001d045742_P001 | Maize | extracellular | 54.08 | 54.08 |
| Zm00001d037361_P001 | Maize | mitochondrion | 51.53 | 52.6 |
| GSMUA_Achr6P24520_001 | Banana | mitochondrion | 36.73 | 39.56 |
| KRH51183 | Soybean | plastid | 32.65 | 36.78 |
| Solyc11g012640.1.1 | Tomato | mitochondrion, plasma membrane | 32.14 | 35.39 |
| KRH01971 | Soybean | plasma membrane, plastid | 30.1 | 35.33 |
| PGSC0003DMT400034588 | Potato | mitochondrion, plasma membrane | 31.63 | 34.83 |
| Bra038457.1-P | Field mustard | extracellular, plastid, vacuole | 25.0 | 34.27 |
| CDY09697 | Canola | plastid | 30.1 | 32.6 |
| CDX90527 | Canola | plastid | 29.59 | 32.22 |
| Bra012722.1-P | Field mustard | plastid | 29.59 | 32.22 |
| AT4G16410.1 | Thale cress | plastid | 29.08 | 30.81 |
| TraesCS7A01G160300.1 | Wheat | plastid | 43.37 | 27.6 |
| TraesCS7D01G161000.1 | Wheat | plastid | 42.35 | 26.86 |
| TraesCS7B01G065200.1 | Wheat | plastid | 42.86 | 26.09 |
| HORVU7Hr1G033500.6 | Barley | plastid | 42.86 | 24.21 |
| VIT_00s0194g00160.t01 | Wine grape | plasma membrane | 32.14 | 22.58 |
| VIT_00s1543g00010.t01 | Wine grape | plasma membrane | 31.63 | 22.22 |
| CDY32241 | Canola | endoplasmic reticulum, extracellular, plastid | 13.27 | 21.85 |
| CDY34464 | Canola | cytosol | 25.51 | 15.38 |
Protein Annotations
| EMBL:AK065746 | EnsemblPlants:Os07t0607200-01 | EnsemblPlantsGene:Os07g0607200 | EntrezGene:4343859 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:Uncharacterised_Ycf33 | PANTHER:PTHR36049 | PFAM:PF05421 | ProteinID:BAD31148.1 | ProteinID:BAD32027.1 |
| ProteinID:BAF22147.1 | ProteinID:BAT02576.1 | ProteinID:EAZ40599.1 | RefSeq:XP_015646722.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI00003FE841 | UniProt:Q69J35 | MapMan:35.2 | : | : | : |
Description
Protein of unknown function DUF751 family protein. (Os07t0607200-01)
Coordinates
chr7:-:24953956..24954811
Molecular Weight (calculated)
21010.3 Da
IEP (calculated)
6.864
GRAVY (calculated)
0.086
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHHLSLLHL PRLSPVLHHH PRHLRLHGRT TVFQARLPSP QRTNQHRLLA VTTAPPEPEK TEEQQLLHPL QEPAEGEVSG GGGADRTCGL PTWALIGAIA
101: AAVALSSAAA AGPAAALGPE GPLVEEFWDN MRRYALYVVT VSTGFAYTLA QPIVELLKNP VTALLIVAVL AGGGFLVSQV LNAMVGNSDF IYTYDQ
101: AAVALSSAAA AGPAAALGPE GPLVEEFWDN MRRYALYVVT VSTGFAYTLA QPIVELLKNP VTALLIVAVL AGGGFLVSQV LNAMVGNSDF IYTYDQ
001: MTMMSLPKMR LSCLQPHLHF TSSRSIAAAL AFPSSSIRNR TSCLVRCGSA RRRLTTKSSR NSKLERAQPP PLGLERHWRY AVVGGVSVGL MMVLVLGMDA
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZK4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.