CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16410.1	KRG89812	AT2G41090.1	17360592
AT4G16410.1	KRG94975	AT2G41090.1	17360592
AT4G16410.1	KRH18664	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01971	Soybean	plasma membrane, plastid	79.89	83.23
Bra038457.1-P	Field mustard	extracellular, plastid, vacuole	40.8	49.65
AT4G16410.1	Thale cress	plastid	47.7	44.86
Bra012722.1-P	Field mustard	plastid	45.4	43.89
CDX90527	Canola	plastid	45.4	43.89
PGSC0003DMT400034588	Potato	mitochondrion, plasma membrane	44.25	43.26
CDY09697	Canola	plastid	44.25	42.54
Solyc11g012640.1.1	Tomato	mitochondrion, plasma membrane	43.1	42.13
GSMUA_Achr6P24520_001	Banana	mitochondrion	43.1	41.21
Zm00001d037361_P001	Maize	mitochondrion	40.8	36.98
CDY32241	Canola	endoplasmic reticulum, extracellular, plastid	24.14	35.29
Zm00001d045742_P001	Maize	extracellular	39.08	34.69
Os07t0607200-01	Rice	plastid	36.78	32.65
EER88230	Sorghum	mitochondrion	35.06	30.81
VIT_00s0194g00160.t01	Wine grape	plasma membrane	43.1	26.88
VIT_00s1543g00010.t01	Wine grape	plasma membrane	42.53	26.52
TraesCS7D01G161000.1	Wheat	plastid	35.06	19.74
TraesCS7B01G065200.1	Wheat	plastid	35.63	19.25
TraesCS7A01G160300.1	Wheat	plastid	33.91	19.16
HORVU7Hr1G033500.6	Barley	plastid	33.91	17.0
CDY34464	Canola	cytosol	30.46	16.31

Protein Annotations

EMBL:ACUP02004730	EnsemblPlants:KRH51183	EnsemblPlantsGene:GLYMA_07G267200	EntrezGene:100795024	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Uncharacterised_Ycf33	PANTHER:PTHR36049	PFAM:PF05421	ProteinID:KRH51183	ProteinID:KRH51183.1
TMHMM:TMhelix	UniParc:UPI0002339093	UniProt:K7L3Z8	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr7:+:44057485..44058949

Molecular Weight (calculated)

18900.4 Da

IEP (calculated)

8.814

GRAVY (calculated)

0.468

Length

174 amino acids

Sequence
(BLAST)

001: MRSVSLRPEL HIPICSSNPP SCVKPIKLVV ASSYGKNLKN PPSKFAITLR EHRTTLEHAA RLPLLKHDSG IVVMGAVCVV GILAVVLSEE KALALGPEGP
101: LVEEFWDNVR RYGLYALTVS TGALYTIFRP IAELLKNPIS AIFILALFGG SIFIVSQVLS AMVGVSEFSY DFGY

Best Arabidopsis Sequence Match ( AT4G16410.1 )
(BLAST)

001: MTMMSLPKMR LSCLQPHLHF TSSRSIAAAL AFPSSSIRNR TSCLVRCGSA RRRLTTKSSR NSKLERAQPP PLGLERHWRY AVVGGVSVGL MMVLVLGMDA
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZK4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.