CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90527	Canola	plastid	23.38	42.22
CDY09697	Canola	plastid	23.38	41.99
AT4G16410.1	Thale cress	plastid	23.69	41.62
Solyc11g012640.1.1	Tomato	mitochondrion, plasma membrane	18.46	33.71
CDY32241	Canola	endoplasmic reticulum, extracellular, plastid	12.31	33.61
KRH01971	Soybean	plasma membrane, plastid	16.92	32.93
PGSC0003DMT400034588	Potato	mitochondrion, plasma membrane	17.85	32.58
GSMUA_Achr6P24520_001	Banana	mitochondrion	17.85	31.87
KRH51183	Soybean	plastid	16.31	30.46
Zm00001d045742_P001	Maize	extracellular	17.54	29.08
Zm00001d037361_P001	Maize	mitochondrion	16.0	27.08
EER88230	Sorghum	mitochondrion	15.69	25.76
Os07t0607200-01	Rice	plastid	15.38	25.51
VIT_00s0194g00160.t01	Wine grape	plasma membrane	19.38	22.58
VIT_00s1543g00010.t01	Wine grape	plasma membrane	19.38	22.58
TraesCS7D01G161000.1	Wheat	plastid	18.77	19.74
TraesCS7A01G160300.1	Wheat	plastid	18.46	19.48
HORVU7Hr1G033500.6	Barley	plastid	20.31	19.02
TraesCS7B01G065200.1	Wheat	plastid	18.77	18.94

Protein Annotations

EnsemblPlants:CDY34464	EnsemblPlantsGene:GSBRNA2T00056571001	GO:A0A078HAF9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Uncharacterised_Ycf33	ncoils:Coil	PFAM:PF05421	ProteinID:CDY34464	ProteinID:CDY34464.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EDB88C	UniProt:A0A078HAF9	MapMan:35.2	:	:

Description

BnaC01g21690DBnaC01g21690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAF9]

Coordinates

chrLK032334:-:330363..331903

Molecular Weight (calculated)

37005.7 Da

IEP (calculated)

5.486

GRAVY (calculated)

-0.240

Length

325 amino acids

Sequence
(BLAST)

001: MSLGEAESSN ALLHLQGDLL RVIINIFLFH QVMSCLHHVG EKTAIEGSAA NQKLIEDLTR QCQQEKDKAL ALEKEVKRLK GNVEQDGMLA RADISSLQRE
101: KDQLHEEVVQ LKIAAETFPK EMEMAVSGAK IVARWELMRE WLKQQTNSWK PAAEFRQYRI FMETEAELKN LPPPSFDDEP EIPDESLDQG DAAYMEHDCF
201: LNSVWCGSAR RRRRRLTAKS ITSLETSHRL GLEKKHWRRY ALVSALMMVL VLGIDAEKAM ALGPEGPLME EFWDNVRRYS VYALTVSTGA LSAVFEPIFE
301: LLKNPITAVL IFIILGGSFV YEYGY

Best Arabidopsis Sequence Match ( AT4G16410.1 )
(BLAST)

001: MTMMSLPKMR LSCLQPHLHF TSSRSIAAAL AFPSSSIRNR TSCLVRCGSA RRRLTTKSSR NSKLERAQPP PLGLERHWRY AVVGGVSVGL MMVLVLGMDA
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZK4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.