Factsheet for Solyc11g012640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 2
mitochondrion 4
plasma membrane 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16410.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G16410.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G16410.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G16410.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G16410.1	Solyc12g099990.1.1	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034588	Potato	mitochondrion, plasma membrane	93.26	93.26
Bra038457.1-P	Field mustard	extracellular, plastid, vacuole	38.2	47.55
Bra012722.1-P	Field mustard	plastid	47.19	46.67
CDX90527	Canola	plastid	47.19	46.67
CDY09697	Canola	plastid	46.63	45.86
KRH01971	Soybean	plasma membrane, plastid	41.01	43.71
AT4G16410.1	Thale cress	plastid	44.94	43.24
KRH51183	Soybean	plastid	42.13	43.1
GSMUA_Achr6P24520_001	Banana	mitochondrion	43.82	42.86
Zm00001d045742_P001	Maize	extracellular	37.64	34.18
CDY32241	Canola	endoplasmic reticulum, extracellular, plastid	21.91	32.77
EER88230	Sorghum	mitochondrion	35.96	32.32
Zm00001d037361_P001	Maize	mitochondrion	34.83	32.29
Os07t0607200-01	Rice	plastid	35.39	32.14
VIT_00s1543g00010.t01	Wine grape	plasma membrane	48.88	31.18
VIT_00s0194g00160.t01	Wine grape	plasma membrane	48.31	30.82
TraesCS7A01G160300.1	Wheat	plastid	37.08	21.43
TraesCS7D01G161000.1	Wheat	plastid	36.52	21.04
TraesCS7B01G065200.1	Wheat	plastid	35.96	19.88
HORVU7Hr1G033500.6	Barley	plastid	36.52	18.73
CDY34464	Canola	cytosol	33.71	18.46

Protein Annotations

EnsemblPlants:Solyc11g012640.1.1	EnsemblPlantsGene:Solyc11g012640.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Uncharacterised_Ycf33
PANTHER:PTHR36049	PFAM:PF05421	TMHMM:TMhelix	UniParc:UPI000276A0FF	UniProt:K4D668	MapMan:35.2

Description

No Description!

Coordinates

chr11:+:5423279..5423815

Molecular Weight (calculated)

20137.0 Da

IEP (calculated)

9.963

GRAVY (calculated)

0.126

Length

178 amino acids

Sequence
(BLAST)

001: MKLQLHFQQS NLPLLIQLKH KSPIKNPRIP YGKREINQLA SEKRSIVKPL SLEILPKFKK LSRSEISKER SNLLVLGAVS FGVVLFLMGF DDKNQALALG
101: PEGPLMEEFW DNMRRYGLYA LTVSTGVLWA VFQPIYELLK NPISAILILT IMGGSVYIVS QVVSAMVGVT DFSYDYNY

Best Arabidopsis Sequence Match ( AT4G16410.1 )
(BLAST)

001: MTMMSLPKMR LSCLQPHLHF TSSRSIAAAL AFPSSSIRNR TSCLVRCGSA RRRLTTKSSR NSKLERAQPP PLGLERHWRY AVVGGVSVGL MMVLVLGMDA
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZK4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.