CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16410.1	EES01631	AT2G41090.1	17360592
AT4G16410.1	EES09201	AT2G41090.1	17360592
AT4G16410.1	EES16322	AT2G41090.1	17360592
AT4G16410.1	OQU78227	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045742_P001	Maize	extracellular	70.71	71.43
Zm00001d037361_P001	Maize	mitochondrion	68.69	70.83
Os07t0607200-01	Rice	plastid	56.06	56.63
GSMUA_Achr6P24520_001	Banana	mitochondrion	38.38	41.76
Bra038457.1-P	Field mustard	extracellular, plastid, vacuole	27.78	38.46
KRH01971	Soybean	plasma membrane, plastid	31.31	37.13
Bra012722.1-P	Field mustard	plastid	32.83	36.11
CDX90527	Canola	plastid	32.83	36.11
PGSC0003DMT400034588	Potato	mitochondrion, plasma membrane	32.32	35.96
Solyc11g012640.1.1	Tomato	mitochondrion, plasma membrane	32.32	35.96
CDY09697	Canola	plastid	32.83	35.91
KRH51183	Soybean	plastid	30.81	35.06
AT4G16410.1	Thale cress	plastid	30.81	32.97
TraesCS7A01G160300.1	Wheat	plastid	44.95	28.9
TraesCS7D01G161000.1	Wheat	plastid	43.94	28.16
TraesCS7B01G065200.1	Wheat	plastid	43.43	26.71
HORVU7Hr1G033500.6	Barley	plastid	44.44	25.36
CDY32241	Canola	endoplasmic reticulum, extracellular, plastid	15.15	25.21
VIT_00s0194g00160.t01	Wine grape	plasma membrane	31.82	22.58
VIT_00s1543g00010.t01	Wine grape	plasma membrane	31.31	22.22
CDY34464	Canola	cytosol	25.76	15.69

Protein Annotations

EnsemblPlants:EER88230	EnsemblPlantsGene:SORBI_3010G116500	EntrezGene:8073725	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Uncharacterised_Ycf33	PANTHER:PTHR36049	PFAM:PF05421	ProteinID:EER88230	ProteinID:EER88230.1	RefSeq:XP_002436863.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0001A89544	UniProt:C5Z8K3	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr10:+:12677438..12678034

Molecular Weight (calculated)

20825.2 Da

IEP (calculated)

9.539

GRAVY (calculated)

0.167

Length

198 amino acids

Sequence
(BLAST)

001: MNQLSLLHRA LHLHRLPPGR GHGLTATAVV RARLSSSEPT PHQHAKRHLA VARPHESIAA ATDQESHHHP RQELAAGGGG GRTRTCALPT WALIGGITAG
101: VAVALALSAG PGAGPALALG PPEGPLVEEF WDNMRRYALY VVTVSTGVAY AVLQPIVELL KNPVTALLIV AVLAGSGFLV SQVLNAMVGN SDFIYRYE

Best Arabidopsis Sequence Match ( AT4G16410.1 )
(BLAST)

001: MTMMSLPKMR LSCLQPHLHF TSSRSIAAAL AFPSSSIRNR TSCLVRCGSA RRRLTTKSSR NSKLERAQPP PLGLERHWRY AVVGGVSVGL MMVLVLGMDA
101: EKAMALGPEG PLMEEFWDNV RRYGLYALTV STGALSAVFE PIFELLKNPI SAILILLILG GSFYIVSQVV SAMIGVNEFA YQYSY

Arabidopsis Description

Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZK4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.