Factsheet for PGSC0003DMT400004479

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12680.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT1G12680.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT1G12680.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT1G12680.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT1G12680.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT1G12680.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT1G12680.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT1G12680.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT1G12680.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT1G12680.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT1G12680.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT1G12680.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT1G12680.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT1G12680.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57079	Canola	cytosol	63.9	63.2
CDX98048	Canola	cytosol	63.46	62.91
VIT_18s0001g07070.t01	Wine grape	cytosol	64.33	62.82
CDY31273	Canola	cytosol	45.73	62.76
KRH62273	Soybean	nucleus	63.46	62.1
KRH52988	Soybean	nucleus	63.46	62.1
Bra019780.1-P	Field mustard	cytosol	64.11	61.68
CDY16025	Canola	cytosol	63.02	60.76
CDY26581	Canola	cytosol	63.02	60.76
TraesCS5D01G252900.1	Wheat	nucleus	51.42	60.57
Bra026959.1-P	Field mustard	cytosol	62.8	60.55
AT1G12680.1	Thale cress	cytosol	61.93	60.21
CDY21060	Canola	nucleus	59.74	59.87
CDY16526	Canola	cytosol	58.86	59.65
Bra016760.1-P	Field mustard	nucleus	59.08	59.21
KRH72420	Soybean	cytosol	56.67	58.33
OQU80661	Sorghum	cytosol	37.2	57.05
KRH16808	Soybean	cytosol	55.8	57.05
GSMUA_Achr8P23440_001	Banana	nucleus	52.74	56.71
TraesCS5A01G246700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	53.39	54.83
Zm00001d020776_P002	Maize	cytosol, mitochondrion, nucleus, plastid	53.39	54.59
Os09t0466900-02	Rice	plastid	54.05	54.53
HORVU5Hr1G069710.1	Barley	nucleus	53.39	54.46
GSMUA_Achr3P21250_001	Banana	cytosol, nucleus, plastid	54.05	54.41
TraesCS5B01G243700.1	Wheat	nucleus	53.17	54.24
OQU89636	Sorghum	plastid	43.54	53.78
PGSC0003DMT400083734	Potato	cytosol	53.17	53.17
GSMUA_Achr3P21240_001	Banana	cytosol	16.63	46.06
Zm00001d031844_P001	Maize	plastid	47.05	46.04
Zm00001d029398_P001	Maize	cytosol, plasma membrane, plastid	21.44	45.79
PGSC0003DMT400042004	Potato	cytosol	26.26	43.17
PGSC0003DMT400044221	Potato	cytosol, mitochondrion	23.41	38.35
PGSC0003DMT400060165	Potato	mitochondrion	23.85	38.11
PGSC0003DMT400029962	Potato	cytosol	23.63	35.41
PGSC0003DMT400029874	Potato	cytosol	23.19	32.12
PGSC0003DMT400036995	Potato	cytosol	30.2	27.01

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.6	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0ZNI3	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400001783	PGSC:PGSC0003DMG400001783
EnsemblPlants:PGSC0003DMT400004479	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24349	PANTHER:PTHR24349:SF180
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000296E178
SEG:seg	:	:	:	:	:

Description

Serine/threonine-protein kinase PEPKR2 [Source:PGSC_GENE;Acc:PGSC0003DMG400001783]

Coordinates

chr1:+:67546901..67550739

Molecular Weight (calculated)

50193.5 Da

IEP (calculated)

8.114

GRAVY (calculated)

-0.260

Length

457 amino acids

Sequence
(BLAST)

001: MWNSIRDSGS SMSNLKTHFS LEECSRRLKK RCKEDDGLCC EVTVGSCGSR TRLAATAPPS GSSSISLCGR GLKRKIGCIE AATQMGRKNK IEDDYVMGGA
101: LGKGKFGSVF LCRSKVTGVE FACKTLPKGE ETVHKEVEIM QHLSGHPGVV TLHSVYEDAE SFHLVMELCS GGRLIDEMTK EGRYSEHKSA NIFKDLMLVI
201: QYCHDMGVVH RDIKPENILL TASGKIKLAD FGLAMRIANG QSLSGLAGSP AYVAPEVLTG DYGQKADIWS AGVLLHALLV GVLPFQGDSL DALFEAIKSM
301: QLDFHSEKWQ SVSKLARDLL ERILTRDVAA RITAEEVLSH PWMMFYTERT LKTVSVRLKP KHFSGTPSQI PAITSRLESD GKKRCSKSLN GETKDLRCES
401: LNRESEESDD SGLVDVLAAA ILHCRISEPK RSRLCVNNSP IREQCSSNVN SNLCKAF

Best Arabidopsis Sequence Match ( AT1G12680.1 )
(BLAST)

001: MRKKRKGSET EGWENLPDDL SCSTASRSSN FRSHFSLEGY ARLKKRCKET EAVESVGSFK RRIAGVATAP PCGASSLVSS GRGLKRKIGC IDVSTQTGRK
101: NKIDDDYVFG RNIGKGKFGS VRICKSRKNG TEFACKTLKK GEETVHREVE IMQHLSGHPR VVTLHAVYEE SDCFHLVMEL CSGGRLIDQM VKVGRYSEQR
201: AANIFKDLML VINYCHEMGV VHRDIKPENI LLTAAGKIQL ADFGLAMRIA KGQTLSGLAG SPAYVAPEVL SENYSEKVDV WSAGVLLYAL LSGVLPFKGD
301: SLDAIFEAIK NVKLDFNTGV WESVSKPARD LLARMLTREE SARITADEVL RHPWILFYTD RTLKTMCIKS KHKSQAGSST CLQNRSPTEK TDLNRADREK
401: KIPSDSPTDS FSNTEEEEDE SGVVDVLVVA IANVRISEPK RSRVCSPTNN PIEQQHSSNL TSTSTLCRAF

Arabidopsis Description

PEPKR2Serine/threonine-protein kinase PEPKR2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W490]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.