Factsheet for VIT_18s0001g07070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12680.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT1G12680.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT1G12680.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT1G12680.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62273	Soybean	nucleus	71.37	71.52
KRH52988	Soybean	nucleus	70.09	70.24
CDX98048	Canola	cytosol	66.03	67.03
AT1G12680.1	Thale cress	cytosol	67.09	66.81
CDY57079	Canola	cytosol	65.6	66.45
CDY31273	Canola	cytosol	47.22	66.37
Bra016760.1-P	Field mustard	nucleus	64.53	66.23
CDY26581	Canola	cytosol	66.67	65.82
CDY16025	Canola	cytosol	66.67	65.82
CDY21060	Canola	nucleus	64.1	65.79
KRH72420	Soybean	cytosol	62.39	65.77
Bra026959.1-P	Field mustard	cytosol	66.45	65.61
Bra019780.1-P	Field mustard	cytosol	66.03	65.05
PGSC0003DMT400004479	Potato	cytosol, plastid	62.82	64.33
KRH16808	Soybean	cytosol	61.32	64.21
TraesCS5D01G252900.1	Wheat	nucleus	52.14	62.89
GSMUA_Achr8P23440_001	Banana	nucleus	57.05	62.82
CDY16526	Canola	cytosol	60.47	62.75
OQU80661	Sorghum	cytosol	38.03	59.73
GSMUA_Achr3P21250_001	Banana	cytosol, nucleus, plastid	57.27	59.03
TraesCS5A01G246700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	55.56	58.43
TraesCS5B01G243700.1	Wheat	nucleus	55.56	58.04
HORVU5Hr1G069710.1	Barley	nucleus	55.34	57.81
OQU89636	Sorghum	plastid	45.51	57.57
Os09t0466900-02	Rice	plastid	55.56	57.4
Zm00001d020776_P002	Maize	cytosol, mitochondrion, nucleus, plastid	54.49	57.05
GSMUA_Achr3P21240_001	Banana	cytosol	18.38	52.12
Zm00001d031844_P001	Maize	plastid	48.29	48.39
Zm00001d029398_P001	Maize	cytosol, plasma membrane, plastid	21.37	46.73
VIT_05s0049g00950.t01	Wine grape	cytosol	24.79	41.73
VIT_14s0036g00420.t01	Wine grape	cytosol	22.86	40.84
VIT_02s0025g04520.t01	Wine grape	cytosol	30.77	27.53
VIT_16s0100g00340.t01	Wine grape	mitochondrion	29.7	22.64

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100255718	wikigene:100255718	MapMan:18.4.5.6	ProteinID:CCB45624	ProteinID:CCB45624.1
UniProt:F6H102	EMBL:FN595227	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0004683	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719
GO:GO:0009738	GO:GO:0009931	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105
GO:GO:0019538	GO:GO:0035556	GO:GO:0046777	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100255718
wikigene:LOC100255718	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24349
PANTHER:PTHR24349:SF180	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI00015C7BB0	ArrayExpress:VIT_18s0001g07070	EnsemblPlantsGene:VIT_18s0001g07070	EnsemblPlants:VIT_18s0001g07070.t01	RefSeq:XP_002285713	RefSeq:XP_002285713.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:5266578..5271872

Molecular Weight (calculated)

51225.2 Da

IEP (calculated)

8.982

GRAVY (calculated)

-0.171

Length

468 amino acids

Sequence
(BLAST)

001: MALMRKRKGS ETDTCLNQSG VLSSYPRNSG SDLSVVRSHF SLEDYARLRK KCKEDVGKVE PVGSCKSRLT GAATVPPCGI SSLVPSGRGL KRKIGCIDVA
101: TQMGRKNKIE NDYALGETIG QGKFGSVWLC RSRISGVEFA CKTLKKGEET VHREVEIMQH LSGHAGIVTL RAVYEDPECF HLVMELCSGG RLVDQMVEEG
201: QYSEHRAANI LRELILVIKY CHDMGVVHRD IKPENILLTA AGKLKLADFG LAMRVAKGQS LSGLAGSPAY VAPEVLLGNY SEKVDIWSAG VLLHALLVGM
301: LPFRGDSLQA VFEAIKNVKL DFHTGIWESI SKPARDLIER MLTRDVSARI TAEEVLRHPW ILFFTERTLN TLSIKSKVKS QQVASELSDR RRIRGGPLGD
401: ALGPVSFSGS SSCKSEDQDD AGLVDALAVA ISHVRISKPK RSRLCEPACP VQQQCSSNMK ANNLCKAF

Best Arabidopsis Sequence Match ( AT1G12680.1 )
(BLAST)

001: MRKKRKGSET EGWENLPDDL SCSTASRSSN FRSHFSLEGY ARLKKRCKET EAVESVGSFK RRIAGVATAP PCGASSLVSS GRGLKRKIGC IDVSTQTGRK
101: NKIDDDYVFG RNIGKGKFGS VRICKSRKNG TEFACKTLKK GEETVHREVE IMQHLSGHPR VVTLHAVYEE SDCFHLVMEL CSGGRLIDQM VKVGRYSEQR
201: AANIFKDLML VINYCHEMGV VHRDIKPENI LLTAAGKIQL ADFGLAMRIA KGQTLSGLAG SPAYVAPEVL SENYSEKVDV WSAGVLLYAL LSGVLPFKGD
301: SLDAIFEAIK NVKLDFNTGV WESVSKPARD LLARMLTREE SARITADEVL RHPWILFYTD RTLKTMCIKS KHKSQAGSST CLQNRSPTEK TDLNRADREK
401: KIPSDSPTDS FSNTEEEEDE SGVVDVLVVA IANVRISEPK RSRVCSPTNN PIEQQHSSNL TSTSTLCRAF

Arabidopsis Description

PEPKR2Serine/threonine-protein kinase PEPKR2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W490]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.