CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12680.1	CDX73678	AT3G51920.1	17360592
AT1G12680.1	CDX95314	AT3G51920.1	17360592
AT1G12680.1	CDY23174	AT3G51920.1	17360592
AT1G12680.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016760.1-P	Field mustard	nucleus	97.15	97.15
CDY31273	Canola	cytosol	67.11	91.89
CDY57079	Canola	cytosol	87.72	86.58
CDX98048	Canola	cytosol	87.06	86.12
CDY26581	Canola	cytosol	88.6	85.23
CDY16025	Canola	cytosol	88.16	84.81
AT1G12680.1	Thale cress	cytosol	85.96	83.4
CDY16526	Canola	cytosol	77.85	78.71
KRH62273	Soybean	nucleus	66.67	65.1
VIT_18s0001g07070.t01	Wine grape	cytosol	65.79	64.1
KRH52988	Soybean	nucleus	65.57	64.03
PGSC0003DMT400004479	Potato	cytosol, plastid	59.87	59.74
KRH16808	Soybean	cytosol	58.55	59.73
KRH72420	Soybean	cytosol	58.11	59.68
TraesCS5D01G252900.1	Wheat	nucleus	50.66	59.54
GSMUA_Achr8P23440_001	Banana	nucleus	54.39	58.35
OQU80661	Sorghum	cytosol	37.28	57.05
TraesCS5A01G246700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	53.73	55.06
TraesCS5B01G243700.1	Wheat	nucleus	53.95	54.91
HORVU5Hr1G069710.1	Barley	nucleus	53.51	54.46
GSMUA_Achr3P21250_001	Banana	cytosol, nucleus, plastid	53.95	54.19
OQU89636	Sorghum	plastid	43.86	54.05
Os09t0466900-02	Rice	plastid	53.51	53.86
Zm00001d020776_P002	Maize	cytosol, mitochondrion, nucleus, plastid	51.97	53.02
GSMUA_Achr3P21240_001	Banana	cytosol	17.54	48.48
Zm00001d031844_P001	Maize	plastid	48.03	46.9
Zm00001d029398_P001	Maize	cytosol, plasma membrane, plastid	21.27	45.33
CDY49329	Canola	cytosol	23.68	38.3
CDY64699	Canola	cytosol	23.46	37.94
CDY46740	Canola	cytosol	22.59	36.4
CDY68533	Canola	cytosol	22.37	36.04
CDX95043	Canola	cytosol	21.93	34.84
CDX93546	Canola	cytosol	21.71	34.49
CDY16015	Canola	cytosol	32.24	28.71
CDY26573	Canola	cytosol	32.24	28.43
CDY58607	Canola	cytosol	32.02	27.92
CDY21058	Canola	cytosol	31.8	27.67

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.6	Gene3D:3.30.200.20	GO:A0A078G3M2	UniProt:A0A078G3M2	EnsemblPlants:CDY21060
ProteinID:CDY21060	ProteinID:CDY21060.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00015229001
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24349	PANTHER:PTHR24349:SF180	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EEE37B	SEG:seg	:	:	:

Description

BnaA08g24650DBnaA08g24650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3M2]

Coordinates

chrLK032115:-:515807..517370

Molecular Weight (calculated)

50522.8 Da

IEP (calculated)

8.978

GRAVY (calculated)

-0.327

Length

456 amino acids

Sequence
(BLAST)

001: MRKKRKGSET ECSEESSCAA ASRTTNFRSH FSLEGYARLK KRCKENDSVG SFKRRLAGVA TAPPCGASSL VSSGRGLKRK ILCVDVSTQT GRKNKIDDDY
101: VFGPSIGKGK FGSVRICRSR NNGMDFACKT LKKWEETVHR EVEIMQHLSG HPLVVTLHAV YEESDCFHLV MELCSGGRLV DQMVKCSEQR AANVFKELML
201: VISYCHEMGV VHRDVKPENI LLTGGGKIQL ADFGLAMRIA KGQTLSGLAG SPAYVTPEVI SENYSEKVDV WSAGVLLYAL LSGVLPFRGD SLDAIFEAIK
301: KVKLDFNSGV WQSVSKPARD LLSRMLTRDE SARLTADEVL RHPWILFYTD RTLKTMCIKS KHKGQAGPPP PCLQIRSLNV NRTNIEKKTT SDSFSNTEEK
401: EEEDESGVVD VLVVAISNVR ISEPKRIRVC SPTNIPPIEQ QHSSNLTATN TLCRAF

Best Arabidopsis Sequence Match ( AT1G12680.1 )
(BLAST)

001: MRKKRKGSET EGWENLPDDL SCSTASRSSN FRSHFSLEGY ARLKKRCKET EAVESVGSFK RRIAGVATAP PCGASSLVSS GRGLKRKIGC IDVSTQTGRK
101: NKIDDDYVFG RNIGKGKFGS VRICKSRKNG TEFACKTLKK GEETVHREVE IMQHLSGHPR VVTLHAVYEE SDCFHLVMEL CSGGRLIDQM VKVGRYSEQR
201: AANIFKDLML VINYCHEMGV VHRDIKPENI LLTAAGKIQL ADFGLAMRIA KGQTLSGLAG SPAYVAPEVL SENYSEKVDV WSAGVLLYAL LSGVLPFKGD
301: SLDAIFEAIK NVKLDFNTGV WESVSKPARD LLARMLTREE SARITADEVL RHPWILFYTD RTLKTMCIKS KHKSQAGSST CLQNRSPTEK TDLNRADREK
401: KIPSDSPTDS FSNTEEEEDE SGVVDVLVVA IANVRISEPK RSRVCSPTNN PIEQQHSSNL TSTSTLCRAF

Arabidopsis Description

PEPKR2Serine/threonine-protein kinase PEPKR2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W490]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.