CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12680.1	KRG89812	AT2G41090.1	17360592
AT1G12680.1	KRG94975	AT2G41090.1	17360592
AT1G12680.1	KRH18664	AT2G41090.1	17360592
AT1G12680.1	KRG89812	AT5G21274.1	17360592
AT1G12680.1	KRG94975	AT5G21274.1	17360592
AT1G12680.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52988	Soybean	nucleus	96.57	96.57
KRH72420	Soybean	cytosol	68.74	72.3
KRH16808	Soybean	cytosol	68.74	71.81
VIT_18s0001g07070.t01	Wine grape	cytosol	71.52	71.37
CDX98048	Canola	cytosol	67.67	68.55
CDY26581	Canola	cytosol	69.38	68.35
CDY57079	Canola	cytosol	67.45	68.18
CDY16025	Canola	cytosol	69.16	68.14
Bra026959.1-P	Field mustard	cytosol	68.74	67.72
AT1G12680.1	Thale cress	cytosol	68.09	67.66
Bra019780.1-P	Field mustard	cytosol	68.52	67.37
Bra016760.1-P	Field mustard	nucleus	65.1	66.67
CDY21060	Canola	nucleus	65.1	66.67
CDY31273	Canola	cytosol	47.32	66.37
TraesCS5D01G252900.1	Wheat	nucleus	54.18	65.21
CDY16526	Canola	cytosol	61.67	63.86
PGSC0003DMT400004479	Potato	cytosol, plastid	62.1	63.46
GSMUA_Achr8P23440_001	Banana	nucleus	55.46	60.94
TraesCS5A01G246700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	57.82	60.67
HORVU5Hr1G069710.1	Barley	nucleus	57.82	60.27
TraesCS5B01G243700.1	Wheat	nucleus	57.82	60.27
OQU80661	Sorghum	cytosol	37.9	59.4
OQU89636	Sorghum	plastid	46.47	58.65
Zm00001d020776_P002	Maize	cytosol, mitochondrion, nucleus, plastid	55.46	57.94
Os09t0466900-02	Rice	plastid	56.1	57.84
GSMUA_Achr3P21250_001	Banana	cytosol, nucleus, plastid	55.89	57.49
GSMUA_Achr3P21240_001	Banana	cytosol	18.42	52.12
Zm00001d029398_P001	Maize	cytosol, plasma membrane, plastid	22.7	49.53
Zm00001d031844_P001	Maize	plastid	49.46	49.46
KRH34471	Soybean	cytosol	24.41	42.22
KRH34157	Soybean	cytosol	23.98	40.88
KRG92624	Soybean	cytosol	23.55	40.15
KRH68799	Soybean	cytosol	23.55	39.01
KRH09150	Soybean	cytosol	31.91	28.76
KRH35387	Soybean	cytosol	25.7	25.81

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100812729	MapMan:18.4.5.6	Gene3D:3.30.200.20	EMBL:ACUP02002229	EnsemblPlantsGene:GLYMA_04G097100
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004683
GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009738	GO:GO:0009931
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	GO:GO:0035556
GO:GO:0046777	UniProt:I1JV96	InterPro:IPR000719	EnsemblPlants:KRH62273	ProteinID:KRH62273	ProteinID:KRH62273.1
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24349
PANTHER:PTHR24349:SF180	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI00023BF151	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:8805185..8808562

Molecular Weight (calculated)

51089.7 Da

IEP (calculated)

8.239

GRAVY (calculated)

-0.237

Length

467 amino acids

Sequence
(BLAST)

001: MRKKRKGSET DGSADLAVIL APNHGSASSN LKSHYSLEDC CRLKKRCCKE EDVDTEPATS FKRRLAGIAT APPCGTSSLI TPGRGLKRKI GCIDVATQMG
101: RKKKIEDDYV SGETIGQGKF GSVWLCRSKV SGAEYACKTL KKGEETVHRE VEIMQHLSGH SGVVTLQAVY EEAECFHLVM ELCSGGRLID RMVEDGPYSE
201: QRAANVLKEV MLVIKYCHDM GVVHRDIKPE NILLTASGKI KLADFGLAMR ISEGQNLTGL AGSPAYVAPE VLLGRYSEKV DIWSAGVLLH ALLVGSLPFQ
301: GDSLEAVFEA IKTVKLDFQN GMWESISKPA RDLIGRMLTR DISARISADE VLRHPWILFY TANTLKMLPI KTKFKNQIGA SCQQLVAVPE PRLGGNRIDT
401: YSLREGSSSE SCNSDDQDEC VLIDVLASAI SHVRISEPKR SRVCGPTGPI VQQGSSNMKP NNLCKAF

Best Arabidopsis Sequence Match ( AT1G12680.1 )
(BLAST)

001: MRKKRKGSET EGWENLPDDL SCSTASRSSN FRSHFSLEGY ARLKKRCKET EAVESVGSFK RRIAGVATAP PCGASSLVSS GRGLKRKIGC IDVSTQTGRK
101: NKIDDDYVFG RNIGKGKFGS VRICKSRKNG TEFACKTLKK GEETVHREVE IMQHLSGHPR VVTLHAVYEE SDCFHLVMEL CSGGRLIDQM VKVGRYSEQR
201: AANIFKDLML VINYCHEMGV VHRDIKPENI LLTAAGKIQL ADFGLAMRIA KGQTLSGLAG SPAYVAPEVL SENYSEKVDV WSAGVLLYAL LSGVLPFKGD
301: SLDAIFEAIK NVKLDFNTGV WESVSKPARD LLARMLTREE SARITADEVL RHPWILFYTD RTLKTMCIKS KHKSQAGSST CLQNRSPTEK TDLNRADREK
401: KIPSDSPTDS FSNTEEEEDE SGVVDVLVVA IANVRISEPK RSRVCSPTNN PIEQQHSSNL TSTSTLCRAF

Arabidopsis Description

PEPKR2Serine/threonine-protein kinase PEPKR2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W490]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.