CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12680.1	CDX73678	AT3G51920.1	17360592
AT1G12680.1	CDX95314	AT3G51920.1	17360592
AT1G12680.1	CDY23174	AT3G51920.1	17360592
AT1G12680.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26581	Canola	cytosol	98.31	98.31
Bra026959.1-P	Field mustard	cytosol	98.1	98.1
CDY57079	Canola	cytosol	90.08	92.42
CDX98048	Canola	cytosol	89.66	92.19
AT1G12680.1	Thale cress	cytosol	89.87	90.64
CDY31273	Canola	cytosol	62.45	88.89
CDY21060	Canola	nucleus	84.81	88.16
CDY16526	Canola	cytosol	80.8	84.92
KRH62273	Soybean	nucleus	68.14	69.16
KRH52988	Soybean	nucleus	66.88	67.88
VIT_18s0001g07070.t01	Wine grape	cytosol	65.82	66.67
PGSC0003DMT400004479	Potato	cytosol, plastid	60.76	63.02
TraesCS5D01G252900.1	Wheat	nucleus	51.48	62.89
KRH72420	Soybean	cytosol	58.44	62.39
KRH16808	Soybean	cytosol	57.81	61.3
GSMUA_Achr8P23440_001	Banana	nucleus	53.8	60.0
OQU80661	Sorghum	cytosol	36.92	58.72
TraesCS5A01G246700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.85	58.43
TraesCS5B01G243700.1	Wheat	nucleus	54.85	58.04
HORVU5Hr1G069710.1	Barley	nucleus	54.64	57.81
Os09t0466900-02	Rice	plastid	54.64	57.17
GSMUA_Achr3P21250_001	Banana	cytosol, nucleus, plastid	54.43	56.83
OQU89636	Sorghum	plastid	44.09	56.49
Zm00001d020776_P002	Maize	cytosol, mitochondrion, nucleus, plastid	52.32	55.48
GSMUA_Achr3P21240_001	Banana	cytosol	17.3	49.7
Zm00001d031844_P001	Maize	plastid	47.68	48.39
Zm00001d029398_P001	Maize	cytosol, plasma membrane, plastid	21.52	47.66
CDY49329	Canola	cytosol	22.36	37.59
CDY64699	Canola	cytosol	22.15	37.23
CDY46740	Canola	cytosol	21.73	36.4
CDY68533	Canola	cytosol	21.52	36.04
CDX95043	Canola	cytosol	21.52	35.54
CDX93546	Canola	cytosol	21.31	35.19
CDY16015	Canola	cytosol	31.43	29.1
CDY26573	Canola	cytosol	31.65	29.01
CDY58607	Canola	cytosol	31.43	28.49
CDY21058	Canola	cytosol	31.43	28.44

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.6	Gene3D:3.30.200.20	GO:A0A078FNN5	UniProt:A0A078FNN5	EnsemblPlants:CDY16025
ProteinID:CDY16025	ProteinID:CDY16025.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00090413001
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24349	PANTHER:PTHR24349:SF180	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EE95A7	SEG:seg	:	:	:

Description

BnaC08g40980DBnaC08g40980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNN5]

Coordinates

chrLK032060:-:225609..228152

Molecular Weight (calculated)

52530.8 Da

IEP (calculated)

8.688

GRAVY (calculated)

-0.446

Length

474 amino acids

Sequence
(BLAST)

001: MRKKRKGSET EGSENLQEDL SSCATGSRSS NFRSHFSLEG YARLKKRCKE NDTVDEESVG SFKRRLAGVA TAPPCGASSL VSSGRGLKRK IGCIDVSTQT
101: GRKNKIDDDY VFGPNIGKGK FGSVRICRSK NNGIDFACKT LKKGEETVHR EVEIMQHLSG HPRVVTLHAV YEESDCFHLV MELCSGGRLI DQMVKEGKYS
201: EQRAANIFKD LMLVIKYCHE MGVVHRDIKP ENILLTAAGK IQLADFGLAM RIAKGQTFSG LAGSPAYVAP EVLSENYSEK VDIWSAGVLL YALLSGVLPF
301: KGDSLDAIFE AIKKVKLDLN SGVWESVSKP ARDLLARMLT REESSRITAD EVLRHPWILF YTDRTLKTMC IKSKHKNQTG PPPCLQIRSQ IEKIDLNRAN
401: REKKKTTSDS PTDSFSNTEE EEDESGVVDV LVVAISNVRI SEPKRSRVCS PTSSPIEQQH SSNLTTTNTL CQAF

Best Arabidopsis Sequence Match ( AT1G12680.1 )
(BLAST)

001: MRKKRKGSET EGWENLPDDL SCSTASRSSN FRSHFSLEGY ARLKKRCKET EAVESVGSFK RRIAGVATAP PCGASSLVSS GRGLKRKIGC IDVSTQTGRK
101: NKIDDDYVFG RNIGKGKFGS VRICKSRKNG TEFACKTLKK GEETVHREVE IMQHLSGHPR VVTLHAVYEE SDCFHLVMEL CSGGRLIDQM VKVGRYSEQR
201: AANIFKDLML VINYCHEMGV VHRDIKPENI LLTAAGKIQL ADFGLAMRIA KGQTLSGLAG SPAYVAPEVL SENYSEKVDV WSAGVLLYAL LSGVLPFKGD
301: SLDAIFEAIK NVKLDFNTGV WESVSKPARD LLARMLTREE SARITADEVL RHPWILFYTD RTLKTMCIKS KHKSQAGSST CLQNRSPTEK TDLNRADREK
401: KIPSDSPTDS FSNTEEEEDE SGVVDVLVVA IANVRISEPK RSRVCSPTNN PIEQQHSSNL TSTSTLCRAF

Arabidopsis Description

PEPKR2Serine/threonine-protein kinase PEPKR2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W490]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.