CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12680.1	CDX73678	AT3G51920.1	17360592
AT1G12680.1	CDX95314	AT3G51920.1	17360592
AT1G12680.1	CDY23174	AT3G51920.1	17360592
AT1G12680.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21060	Canola	nucleus	91.89	67.11
CDY57079	Canola	cytosol	87.69	63.2
CDX98048	Canola	cytosol	87.09	62.91
CDY26581	Canola	cytosol	89.49	62.87
AT1G12680.1	Thale cress	cytosol	88.29	62.55
CDY16526	Canola	cytosol	84.68	62.53
CDY16025	Canola	cytosol	88.89	62.45
OQU80661	Sorghum	cytosol	50.15	56.04
TraesCS5D01G252900.1	Wheat	nucleus	59.76	51.29
GSMUA_Achr3P21240_001	Banana	cytosol	23.72	47.88
KRH62273	Soybean	nucleus	66.37	47.32
VIT_18s0001g07070.t01	Wine grape	cytosol	66.37	47.22
KRH72420	Soybean	cytosol	62.76	47.07
KRH52988	Soybean	nucleus	65.47	46.68
GSMUA_Achr8P23440_001	Banana	nucleus	58.86	46.12
KRH16808	Soybean	cytosol	61.56	45.86
PGSC0003DMT400004479	Potato	cytosol, plastid	62.76	45.73
TraesCS5A01G246700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.06	44.94
Os09t0466900-02	Rice	plastid	60.96	44.81
TraesCS5B01G243700.1	Wheat	nucleus	60.06	44.64
HORVU5Hr1G069710.1	Barley	nucleus	59.76	44.42
Zm00001d029398_P001	Maize	cytosol, plasma membrane, plastid	28.53	44.39
Zm00001d020776_P002	Maize	cytosol, mitochondrion, nucleus, plastid	57.96	43.18
GSMUA_Achr3P21250_001	Banana	cytosol, nucleus, plastid	58.26	42.73
OQU89636	Sorghum	plastid	46.55	41.89
Zm00001d031844_P001	Maize	plastid	52.85	37.69
CDY64699	Canola	cytosol	29.73	35.11
CDY49329	Canola	cytosol	29.73	35.11
CDY68533	Canola	cytosol	27.93	32.86
CDY46740	Canola	cytosol	27.93	32.86
CDX95043	Canola	cytosol	27.33	31.71
CDX93546	Canola	cytosol	27.03	31.36
CDY16015	Canola	cytosol	39.64	25.78
CDY26573	Canola	cytosol	39.64	25.53
CDY58607	Canola	cytosol	39.64	25.24
CDY21058	Canola	cytosol	39.34	25.0

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.6	Gene3D:3.30.200.20	GO:A0A078H342	UniProt:A0A078H342	EnsemblPlants:CDY31273
ProteinID:CDY31273	ProteinID:CDY31273.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00047434001	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24349	PANTHER:PTHR24349:SF180
InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EC0FF6	SEG:seg

Description

BnaC08g15680DBnaC08g15680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H342]

Coordinates

chrLK032269:-:454913..456097

Molecular Weight (calculated)

36977.5 Da

IEP (calculated)

6.188

GRAVY (calculated)

-0.173

Length

333 amino acids

Sequence
(BLAST)

001: MDFACKTLKK GEETVHREVE IMQHLSGHPL VVALHAVYEE SDCFHLVMEL CSGGRLVDQM VKEGKCSEQR AANIFKDLML VISYCHEMGV VHRDVKPENI
101: LLTGAGKIQL ADFGLAMRIA KGQTLSGLLG SPAYVAPEVI SESYSEKVDV WSAGVLLSGV LPFKGDSLDA IFEAIKKVKL DFNSGVWESV SKPARDLLAR
201: MLTRDESARI TADEVLRHPW ILFYTDRTLK TMCIKSKHKG QAGPPPCLQI RSLMEKTDLN RTDIENKTTS DSFSNAEEVE EDESGVVDVL VVAISNVRIS
301: EPKRIRVYSP TNNPIEQQHS SNLTATNTLC RAF

Best Arabidopsis Sequence Match ( AT1G12580.1 )
(BLAST)

001: MGMDIADKEN TSPLLFEFCN CYKVASLTET ILNPVNVSNL KDRYVLGEQL GWGQFGVIRV CSDKLTGERL ACKSISKDRL VTQDDMKSIK LEIAIMAKLA
101: GHPNVVNLKA VYEEKDSVHL VMELCAGGEL FHKLEKYGRY SEVRARVLFK HLMQVVKFCH DSGIVHRDLK PENILMATMS SSSPIKLADF GLATYIKPGE
201: KLSGTVGSPF YIAPEVLAGG YNQAADVWSA GVILYILLSG APPFWGKTKS KIFDAVRAAD LRFSAEPWDN ITSYAKDLIR GMLCVDPSQR LSADEVLAHS
301: WMEQLSESGQ EQYDQDGFGC EGLENGGCSF STQCVSREQD YSFSVGQLEQ STDNDFKSSF STFLPADNTL PNSGFDGFSF DGKQPESTTA GFSSTGIPSM
401: PSFTFFCTSP ARTQNNDITE IDGKVRDSSP KRLLPSPDSS SQLERRDEAG ENQTEAGGKS ETRRERGNWS RMSGLHSKRN RTIGLGELDQ LVVDVAVTES
501: IIRWASCTHI PTAPSLRLSL VC

Arabidopsis Description

PEPKR1PEPKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178WE53]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.