Factsheet for PGSC0003DMT400060165

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055050.1.1	Tomato	cytosol	65.38	92.12
PGSC0003DMT400029962	Potato	cytosol	73.43	68.85
PGSC0003DMT400029874	Potato	cytosol	71.33	61.82
KRH34157	Soybean	cytosol	57.69	60.22
KRG92624	Soybean	cytosol	57.34	59.85
PGSC0003DMT400044221	Potato	cytosol, mitochondrion	57.34	58.78
PGSC0003DMT400042004	Potato	cytosol	55.59	57.19
GSMUA_AchrUn_...	Banana	cytosol	48.6	54.72
AT3G04530.1	Thale cress	cytosol	50.0	51.44
TraesCS6B01G413600.1	Wheat	cytosol	50.35	51.43
TraesCS6B01G413500.1	Wheat	cytosol	50.7	51.06
EES07722	Sorghum	cytosol	50.7	51.06
TraesCS6D01G360800.1	Wheat	cytosol	50.7	51.06
TraesCS6A01G375800.1	Wheat	cytosol	50.35	50.7
TraesCS6D01G360900.1	Wheat	cytosol	50.35	50.7
HORVU4Hr1G045160.2	Barley	cytosol	49.3	50.54
KRH68799	Soybean	cytosol	49.65	50.35
AT1G08650.1	Thale cress	cytosol	50.0	50.35
Zm00001d018429_P001	Maize	cytosol	50.0	50.0
TraesCS6A01G375900.1	Wheat	cytosol	49.65	50.0
Os02t0807000-01	Rice	cytosol	50.35	49.83
CDY49329	Canola	cytosol	48.95	49.65
Bra040186.1-P	Field mustard	cytosol	48.6	49.29
CDY64699	Canola	cytosol	48.6	49.29
GSMUA_Achr2P12320_001	Banana	cytosol	50.0	49.14
GSMUA_Achr4P21890_001	Banana	cytosol	47.9	49.1
CDX95043	Canola	cytosol	48.6	48.43
CDY46740	Canola	cytosol	47.9	48.41
CDX93546	Canola	cytosol	48.25	48.08
Bra030737.1-P	Field mustard	cytosol	47.55	48.06
CDY68533	Canola	cytosol	47.2	47.7
GSMUA_Achr5P03930_001	Banana	cytosol	50.35	47.37
HORVU6Hr1G067760.8	Barley	mitochondrion	31.47	46.63
TraesCS2D01G378100.1	Wheat	cytosol	45.8	45.33
TraesCS2B01G398900.1	Wheat	cytosol	45.8	45.17
TraesCS2A01G381600.1	Wheat	cytosol	45.45	45.14
Zm00001d003068_P001	Maize	cytosol	45.8	44.71
HORVU5Hr1G037500.1	Barley	plastid	39.51	44.49
TraesCS6A01G223500.1	Wheat	cytosol	45.1	44.48
TraesCS6B01G257800.1	Wheat	cytosol	45.1	44.48
TraesCS6D01G211900.1	Wheat	cytosol	45.1	44.48
EES11118	Sorghum	cytosol	46.5	44.48
Os02t0625300-00	Rice	cytosol	45.1	42.3
HORVU6Hr1G058780.1	Barley	cytosol	44.06	42.28
Zm00001d051156_P001	Maize	cytosol	43.71	41.95
EES05452	Sorghum	cytosol	44.76	41.69
GSMUA_Achr5P03940_001	Banana	cytosol	45.8	41.59
Zm00001d017270_P001	Maize	cytosol	43.36	39.87
GSMUA_Achr4P28690_001	Banana	cytosol	47.9	39.14
Bra018609.1-P	Field mustard	cytosol	48.95	35.99
Os04t0517500-01	Rice	cytosol	28.67	35.34
PGSC0003DMT400004479	Potato	cytosol, plastid	38.11	23.85
PGSC0003DMT400083734	Potato	cytosol	37.41	23.41
PGSC0003DMT400036995	Potato	cytosol	39.16	21.92

Protein Annotations

Gene3D:1.10.510.10	MapMan:1.4.1.2	MapMan:18.4.5.7	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1C5B9	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400023404
PGSC:PGSC0003DMG400023404	EnsemblPlants:PGSC0003DMT400060165	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24349	PANTHER:PTHR24349:SF76	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002951284	:	:	:	:

Description

PEP carboxylase kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400023404]

Coordinates

chr5:-:50764686..50766166

Molecular Weight (calculated)

32374.3 Da

IEP (calculated)

6.883

GRAVY (calculated)

-0.056

Length

286 amino acids

Sequence
(BLAST)

001: MFESLKTDEL QMNEQIGQGR FGTVYRCFSK STDQFFACKT IQKNLLIDST DRQCLDKEPK ILQLLTGKSN ILQMYKVYED ENYVHIVTEL CSGGDLYKRV
101: SNGPLSEKSA SLILIRLVSA IGHCHKLGVA HRDIKPDNVL FDSQDDLKLA DFGSAEWFMG CDGKMMEGVV GTPYYVAPEV LLGRKYNEKV DIWSAGVILY
201: IMLSGVPPFY GDTPTETFEA VLRGNLRFPT RIFRSISTEA KDLLRKMICK DVSRRFSAEQ VLSMLFSLTQ STLVLSNCFV FYPVLV

Best Arabidopsis Sequence Match ( AT1G08650.1 )
(BLAST)

001: MTCSQTLGNN NTNKYQICEE IGRGRFGTVS RVYAPATGDF FACKTIDKAS LSDDLDRACL DNEPKLMALL SYHPNIVQIH DLIDTDSTLS IFMELVHPSV
101: SIYDRLVSSG TFFEPQTASF AKQILQALSH CHRYGVVHRD IKPENILVDL RNDTVKICDF GSGIWLGEGE TTEGVVGTPY YVAPEVLMGY SYGEKVDLWS
201: AGVVLYTMLA GTPPFYGETA EEIFEAVLRG NLRFPTKIFR GVSSMAKDFL RKLICKDASR RFSAEQALRH PWIQRAGETE ERFI

Arabidopsis Description

PPCK1Phosphoenolpyruvate carboxylase kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.