Factsheet for PGSC0003DMT400029874

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009910.2.1	Tomato	cytosol	77.58	92.42
PGSC0003DMT400029962	Potato	cytosol	83.03	89.84
PGSC0003DMT400060165	Potato	mitochondrion	61.82	71.33
KRH34157	Soybean	cytosol	51.82	62.41
KRG92624	Soybean	cytosol	50.61	60.95
PGSC0003DMT400044221	Potato	cytosol, mitochondrion	51.21	60.57
GSMUA_AchrUn_...	Banana	cytosol	46.36	60.24
PGSC0003DMT400042004	Potato	cytosol	49.7	58.99
TraesCS6B01G413600.1	Wheat	cytosol	46.06	54.29
TraesCS6B01G413500.1	Wheat	cytosol	46.36	53.87
TraesCS6D01G360800.1	Wheat	cytosol	46.36	53.87
Os02t0807000-01	Rice	cytosol	46.97	53.63
AT3G04530.1	Thale cress	cytosol	45.15	53.6
TraesCS6A01G375800.1	Wheat	cytosol	46.06	53.52
TraesCS6A01G375900.1	Wheat	cytosol	46.06	53.52
TraesCS6D01G360900.1	Wheat	cytosol	46.06	53.52
AT1G08650.1	Thale cress	cytosol	45.76	53.17
CDY64699	Canola	cytosol	45.15	52.84
GSMUA_Achr4P21890_001	Banana	cytosol	44.55	52.69
HORVU4Hr1G045160.2	Barley	cytosol	44.55	52.69
CDX93546	Canola	cytosol	45.76	52.61
KRH68799	Soybean	cytosol	44.85	52.48
EES07722	Sorghum	cytosol	45.15	52.46
CDX95043	Canola	cytosol	45.45	52.26
CDY49329	Canola	cytosol	44.55	52.13
Zm00001d018429_P001	Maize	cytosol	45.15	52.1
CDY46740	Canola	cytosol	44.55	51.94
GSMUA_Achr2P12320_001	Banana	cytosol	45.76	51.89
Bra040186.1-P	Field mustard	cytosol	44.24	51.77
Bra030737.1-P	Field mustard	cytosol	44.24	51.59
CDY68533	Canola	cytosol	43.94	51.24
GSMUA_Achr5P03930_001	Banana	cytosol	46.06	50.0
TraesCS2D01G378100.1	Wheat	cytosol	43.64	49.83
Zm00001d003068_P001	Maize	cytosol	43.64	49.15
TraesCS2B01G398900.1	Wheat	cytosol	43.03	48.97
EES11118	Sorghum	cytosol	44.24	48.83
TraesCS2A01G381600.1	Wheat	cytosol	42.42	48.61
HORVU6Hr1G067760.8	Barley	mitochondrion	28.18	48.19
TraesCS6B01G257800.1	Wheat	cytosol	42.12	47.93
TraesCS6D01G211900.1	Wheat	cytosol	42.12	47.93
TraesCS6A01G223500.1	Wheat	cytosol	42.12	47.93
Zm00001d051156_P001	Maize	cytosol	42.42	46.98
Os02t0625300-00	Rice	cytosol	43.33	46.89
HORVU6Hr1G058780.1	Barley	cytosol	41.82	46.31
EES05452	Sorghum	cytosol	43.03	46.25
HORVU5Hr1G037500.1	Barley	plastid	35.45	46.06
Zm00001d017270_P001	Maize	cytosol	41.82	44.37
GSMUA_Achr5P03940_001	Banana	cytosol	41.82	43.81
GSMUA_Achr4P28690_001	Banana	cytosol	45.45	42.86
Os04t0517500-01	Rice	cytosol	28.79	40.95
Bra018609.1-P	Field mustard	cytosol	46.06	39.07
PGSC0003DMT400083734	Potato	cytosol	32.73	23.63
PGSC0003DMT400004479	Potato	cytosol, plastid	32.12	23.19
PGSC0003DMT400036995	Potato	cytosol	33.64	21.72

Protein Annotations

Gene3D:1.10.510.10	MapMan:1.4.1.2	MapMan:18.4.5.7	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1ATH9
PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400011480	PGSC:PGSC0003DMG400011480	EnsemblPlants:PGSC0003DMT400029874	PIRSF:PIRSF000654	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24349	PANTHER:PTHR24349:SF76	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI000294ECD4	SEG:seg

Description

PEPC kinase 1b [Source:PGSC_GENE;Acc:PGSC0003DMG400011480]

Coordinates

chr4:-:6166239..6168010

Molecular Weight (calculated)

37619.7 Da

IEP (calculated)

7.641

GRAVY (calculated)

0.061

Length

330 amino acids

Sequence
(BLAST)

001: MFQTLKNEFQ ICEEIGRGRF GTVYRCFSPA TGETYACKSI DKNLLIDSTD RECLDKEPKI LQLLSGNPNI LHLYKVYEDD DFLHMVTDFC PNSDLYERVS
101: SGSLSESAAA AILIQLVSAI SYCHHMGVAH RDIKPDNVLF DSENRLKLAD FGSAEWFAGC EGRMMSGVVG TPYYVAPEIL MGKEYNEKVD VWSVGVILYI
201: MLSGVPPFYG ETPTETFQAV LRGNLRFPTR NFRSVSPEAK DLLRKMICKD VSRRFSAEQV LSKLNFSDFH FALFLLFGKL QNIFLISALR FTLFRCCYCF
301: VVVTVLHVCI LRRYALFTIR KHSILPKPHV

Best Arabidopsis Sequence Match ( AT3G04530.1 )
(BLAST)

001: MTREFELENN YQLCDEIGRG RFGTITRCFS PATKEFYACK TIDKRVLIDA LDRECIETEP RIMAMLPPHP NIIRIFDLYE TEDSLAIVME LVDPPMTIYD
101: RLISAGGRLS ESESASYAKQ ILSALAHCHR CDVVHRDVKP DNVLVDLVSG GVKLCDFGSA VWLGGETAEG VVGTPYYVAP EVVMGRKYDE KVDIWSAGVV
201: IYTMLAGEPP FNGETAEDIF ESILRGNLRF PPKKFGSVSS EAKDLLRKMI CRDVSRRFSA EDALRHSWMM NVGNLQSN

Arabidopsis Description

PPCK2Phosphoenolpyruvate carboxylase kinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VK0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.