Factsheet for PGSC0003DMT400068892

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01890.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT5G01890.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT5G01890.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT5G01890.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT5G01890.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT5G01890.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT5G01890.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT5G01890.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT5G01890.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT5G01890.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT5G01890.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT5G01890.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT5G01890.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT5G01890.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT5G01890.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT5G01890.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g015520.2.1	Tomato	plasma membrane	95.63	92.95
VIT_08s0058g01340.t01	Wine grape	plasma membrane	65.67	65.88
KRH00443	Soybean	cytosol, nucleus	65.25	65.81
KRH40729	Soybean	plasma membrane	65.46	63.5
KRH76129	Soybean	plasma membrane	64.39	62.33
Bra028916.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane, plastid	44.99	61.16
KRH65414	Soybean	plasma membrane	63.22	61.13
PGSC0003DMT400042952	Potato	plasma membrane	57.89	60.74
PGSC0003DMT400070944	Potato	plasma membrane	60.77	58.82
GSMUA_Achr9P04820_001	Banana	plasma membrane	48.51	58.18
CDY04822	Canola	plasma membrane	57.25	57.87
GSMUA_Achr6P32490_001	Banana	plasma membrane	47.12	57.7
AT5G01890.1	Thale cress	plasma membrane	59.17	57.39
GSMUA_Achr5P29680_001	Banana	plasma membrane	45.1	56.48
TraesCS4D01G172000.1	Wheat	plasma membrane	56.5	54.47
TraesCS4B01G169900.1	Wheat	plasma membrane	56.5	54.3
HORVU4Hr1G050250.1	Barley	plasma membrane	56.29	54.27
TraesCS4A01G135200.1	Wheat	plasma membrane	56.18	54.16
Os03t0335500-01	Rice	plasma membrane	55.97	54.07
EER94903	Sorghum	plasma membrane	55.44	53.5
Os01t0821900-01	Rice	peroxisome, plasma membrane	44.03	53.29
Zm00001d029059_P001	Maize	plasma membrane	54.9	52.98
Os05t0478300-01	Rice	plasma membrane, plastid, vacuole	42.96	51.21
HORVU3Hr1G081050.3	Barley	plastid	45.63	51.01
EES03806	Sorghum	plasma membrane	50.43	49.89
TraesCS3A01G344300.1	Wheat	plasma membrane	46.16	49.66
Zm00001d043058_P001	Maize	plasma membrane	50.21	49.63
TraesCS3D01G337800.1	Wheat	plasma membrane	50.11	49.58
TraesCS3B01G376200.1	Wheat	plasma membrane	49.89	49.47
EES18394	Sorghum	plasma membrane, plastid	45.2	44.92
Zm00001d038481_P001	Maize	plasma membrane, plastid	44.99	43.28
PGSC0003DMT400055650	Potato	plasma membrane	44.46	42.38
PGSC0003DMT400010074	Potato	plasma membrane	34.97	37.19
PGSC0003DMT400079665	Potato	plasma membrane	24.95	31.28
PGSC0003DMT400048435	Potato	plasma membrane	32.09	30.4

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.7	Gene3D:3.30.200.20	Gene3D:3.80.10.10	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M1CJM7	PFAM:PF00560	PFAM:PF07714
PFAM:PF08263	PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400026792	PGSC:PGSC0003DMG400026792	EnsemblPlants:PGSC0003DMT400068892	PRINTS:PR00019
ScanProsite:PS00107	PFscan:PS50011	PFscan:PS51450	PANTHER:PTHR27000	PANTHER:PTHR27000:SF324	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00369	SUPFAM:SSF52047	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
TMHMM:TMhelix	UniParc:UPI000294CBCD	:	:	:	:

Description

Brassinosteroid LRR receptor kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400026792]

Coordinates

chr9:-:17857068..17860901

Molecular Weight (calculated)

102086.0 Da

IEP (calculated)

5.337

GRAVY (calculated)

0.027

Length

938 amino acids

Sequence
(BLAST)

001: MGLIVLKAGF TDPKSKLASW TEDDPTPCNW VGINCYPQSN RVSEILLDNF SLSGHIGRSL LRLQFLKVLS LSNNNFTGNI NPILSQIPSL RVIDLSHNTL
101: SGSIPDEFFQ QCSSLQSVSF ANNNLTGEIP QSLTSCSTLQ RVNFSSNRLS GPLPSALWSL TSLQSLDVSD NLMEGEIPKA IEGLYSLRSI NLHKNKFTGW
201: LPENIGNCVQ LKSIDLSDNL LNGELPESMR RLGFCTNMEL RSNLLNGQIP DWIAEMKSLK VLDLSANNLS GRIPTSMGDV SLLKELNLSN NYFVGSLPRS
301: LMKCNDLVIL DIGNNFLTGN LPSWTFELGV ESISLSGNRF TGHIDYPSIS MDASYRSLQV LDLSSNALSG EIPAAIWNIS SLQVLNISRN FLSGTIPEAV
401: GKLNATRILD LSHNQLNGSI PSEIGSAVSL LELKLRENHL SGTIPADIAN CSALSSLDLS HNNLTGPIPP EIAKLTILEV VDFSFNQFSG SLPKELTNLS
501: HLATFNVSHN HLKGELPVGG FFNTISPSSV VGNPSLCGSV LNHSCPAVHP KPLVLNPNSS DPNHASVTSL GHKRIMLSIS SLIAIGAAVF IALGVVVVSI
601: LNLHVRSSMA LSAATFTLSG GDDFSHSHGT EANLGKLVMF SGDADFVVGT QALLNKDNEL GRGGFGSVYK TELGDGRSVA IKKLNITSLI KSQEDFEREM
701: KSLGSIRHEN LVALEGYYWT PSLQLLINEY VSGGSLYKLL HEESSKRSLS WQQRFNIILD TAKGLAYLHQ LNIIHYNMKS TNVLIDDGSA STKVGDFGLA
801: RLLPVLDRYI LSSKIQSALG YMAPEFACQT VKITEKCDVY GFGILILEVV TGKRPMEYME DDVIVLCDMV RGALEEGRIE ECIDGRLQGN FPVEEAIPVV
901: KLGLICASQV PSNRPDMEEV IKILELIRCP SESPEEIE

Best Arabidopsis Sequence Match ( AT3G56370.1 )
(BLAST)

001: MYKALIFTVL LVSAVAPVRS LDPPLNDDVL GLIVFKADLR DPEQKLASWN EDDYTPCSWN GVKCHPRTNR VTELNLDGFS LSGRIGRGLL QLQFLHKLSL
101: SNNNLTGIIN PNMLLSLVNL KVVDLSSNGL SGSLPDEFFR QCGSLRVLSL AKNKLTGKIP VSISSCSSLA ALNLSSNGFS GSMPLGIWSL NTLRSLDLSR
201: NELEGEFPEK IDRLNNLRAL DLSRNRLSGP IPSEIGSCML LKTIDLSENS LSGSLPNTFQ QLSLCYSLNL GKNALEGEVP KWIGEMRSLE TLDLSMNKFS
301: GQVPDSIGNL LALKVLNFSG NGLIGSLPVS TANCINLLAL DLSGNSLTGK LPMWLFQDGS RDVSALKNDN STGGIKKIQV LDLSHNAFSG EIGAGLGDLR
401: DLEGLHLSRN SLTGPIPSTI GELKHLSVLD VSHNQLNGMI PRETGGAVSL EELRLENNLL EGNIPSSIKN CSSLRSLILS HNKLLGSIPP ELAKLTRLEE
501: VDLSFNELAG TLPKQLANLG YLHTFNISHN HLFGELPAGG IFNGLSPSSV SGNPGICGAV VNKSCPAISP KPIVLNPNAT FDPYNGEIVP PGAGHKRILL
601: SISSLIAISA AAAIVVGVIA ITVLNLRVRA STVSRSAVPL TFSGGDDFSR SPTTDSNSGK LVMFSGEPDF STGTHALLNK DCELGRGGFG AVYRTVIRDG
701: YPVAIKKLTV SSLVKSQDEF EREVKKLGKL RHSNLVKLEG YYWTTSLQLL IYEFLSGGSL YKQLHEAPGG NSSLSWNDRF NIILGTAKCL AYLHQSNIIH
801: YNIKSSNVLL DSSGEPKVGD YGLARLLPML DRYVLSSKIQ SALGYMAPEF ACRTVKITEK CDVYGFGVLV LEVVTGKKPV EYMEDDVVVL CDMVREALED
901: GRADECIDPR LQGKFPVEEA VAVIKLGLIC TSQVPSSRPH MGEAVNILRM IRCPSGSSDE LGSS

Arabidopsis Description

IRKProbable LRR receptor-like serine/threonine-protein kinase IRK [Source:UniProtKB/Swiss-Prot;Acc:Q9LY03]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.