Factsheet for GSMUA_Achr5P29680_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P01120_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P03800_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001
GSMUA_Achr7P02030_001
GSMUA_Achr8P05790_001
GSMUA_Achr8P25600_001
GSMUA_Achr9P12540_001
GSMUA_Achr9P17280_001
GSMUA_Achr9P20170_001
GSMUA_Achr9P27740_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56370.1	GSMUA_Achr3P03800_001	AT5G12900.1	15618632
AT3G56370.1	GSMUA_Achr7P02030_001	AT5G12900.1	15618632
AT3G56370.1	GSMUA_Achr8P25600_001	AT5G12900.1	15618632
AT3G56370.1	GSMUA_Achr9P12540_001	AT5G12900.1	15618632
AT3G56370.1	GSMUA_Achr9P20170_001	AT5G12900.1	15618632
AT3G56370.1	GSMUA_Achr9P27740_001	AT5G12900.1	15618632
AT5G01890.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT5G01890.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT5G01890.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT5G01890.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT5G01890.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT5G01890.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT5G01890.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT5G01890.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT5G01890.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT5G01890.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT5G01890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT5G01890.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P32490_001	Banana	plasma membrane	62.75	61.36
GSMUA_Achr9P04820_001	Banana	plasma membrane	61.95	59.34
PGSC0003DMT400042952	Potato	plasma membrane	60.08	50.34
Solyc06g048950.2.1	Tomato	plasma membrane	59.95	50.22
VIT_08s0058g01340.t01	Wine grape	plasma membrane	62.22	49.84
CDY27220	Canola	plasma membrane	60.75	48.61
CDX72142	Canola	plasma membrane	59.95	47.97
Bra007241.1-P	Field mustard	plasma membrane	61.01	47.65
Solyc06g048620.2.1	Tomato	plasma membrane	61.55	47.48
KRH53723	Soybean	plasma membrane	61.95	47.44
AT3G56370.1	Thale cress	plasma membrane	61.01	47.41
KRH64211	Soybean	plasma membrane	61.82	47.34
PGSC0003DMT400070944	Potato	plasma membrane	61.15	47.27
VIT_13s0067g03050.t01	Wine grape	plasma membrane	65.42	47.12
KRH00443	Soybean	cytosol, nucleus	58.21	46.88
KRH40729	Soybean	plasma membrane	59.95	46.43
Bra028916.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane, plastid	42.72	46.38
CDY04822	Canola	plasma membrane	56.07	45.26
PGSC0003DMT400068892	Potato	plasma membrane	56.48	45.1
Solyc09g015520.2.1	Tomato	plasma membrane	57.81	44.87
AT5G01890.1	Thale cress	plasma membrane	55.94	43.33
KRH76129	Soybean	plasma membrane	55.81	43.14
KRH65414	Soybean	plasma membrane	55.41	42.78
GSMUA_Achr9P01740_001	Banana	plasma membrane	39.25	38.18
GSMUA_Achr6P27930_001	Banana	plasma membrane	35.65	36.73
GSMUA_Achr6P06620_001	Banana	plasma membrane	37.25	35.23
GSMUA_Achr1P03780_001	Banana	plasma membrane	30.31	32.85
GSMUA_Achr5P10330_001	Banana	plasma membrane	32.04	32.3
GSMUA_Achr4P19570_001	Banana	cytosol	10.81	25.96
GSMUA_Achr4P19580_001	Banana	cytosol, nucleus, plasma membrane	19.89	24.92
GSMUA_Achr7P02290_001	Banana	plasma membrane	32.31	24.9

Protein Annotations

Gene3D:1.10.510.10	Gene3D:3.80.10.10	MapMan:50.2.7	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G29680_001	EnsemblPlants:GSMUA_Achr5P29680_001	EnsemblPlants:GSMUA_Achr5T29680_001
InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M0T2U2	PFAM:PF00560	PFAM:PF07714	PFAM:PF08263
ScanProsite:PS00107	PFscan:PS50011	PANTHER:PTHR27000	PANTHER:PTHR27000:SF244	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000294E5EB	SEG:seg	:	:	:	:

Description

Putative Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Source:GMGC_GENE;Acc:GSMUA_Achr5G29680_001]

Coordinates

chr5:-:29315737..29319549

Molecular Weight (calculated)

81228.1 Da

IEP (calculated)

7.950

GRAVY (calculated)

0.142

Length

749 amino acids

Sequence
(BLAST)

001: MRNLAFCLAS LLLFCPLLAK SGSPGLNDDV LGLIVFKADI LDPLSKLASW NEDEDDPCGW TGVKCNAKTN RVTELSLVGF SLSGKIGRGL LQLQSIQNLG
101: SCLTLAALNL SSNRLSGSLP KGLWSLYGLR SLDLSDNSLV GEIPGGISRL YNLRSISLRQ NHLSGRLPDD MGSCLLLKYL DFSVNFLTGS LPDSMHRLSM
201: CSHLRLASNL FSGKVPTWIG EMKNLEFLDL SRNWLTGGLP ESIGACRSLT DLDLMFGNKM SGCISVGVSA TRSLSYLDLS GNAFSGAIPL VLGNLLSLRQ
301: LNLNLINGSI PLEIGKAVSL KELRLEKNSL TGEIPVQIGN CSSLTTMALM PWSQQRGLSI WMLSQNNLTG PLPQTIANLT NLHKVDLSFN RLSGNLPKQL
401: SNLPHLLSFN ISHNLFSGDL PAGNFFNAIP PSSLSDNPGL CGSVVNRSCP TNTRHKKIIF SISALIAIGA AVVIALGVIT ITILNMRVRA STDPHSAAAL
501: ALDPNFSTRA HTILNKDCEL GRGGFGTVYK TNLRDGRPVV IKKLTVSSLH LHECSTSNPF SWQERFDIIL GIARSLAYLH RLNIIHYNLK SSNILIDGSG
601: EAKVGDYGLA KLLPMLDRYV LSSKIQSALG YMAPEFACRM VKITEKCDVY GFGVLLLEII TGRRPVEYME DDVVVLCDVV RVALEEGRVD ELVDGRLGGK
701: FPAEEGVPVV KLGLICTSQV PSNRPGMSEV VSILEMIRCP QEHLENEST

Best Arabidopsis Sequence Match ( AT3G56370.1 )
(BLAST)

001: MYKALIFTVL LVSAVAPVRS LDPPLNDDVL GLIVFKADLR DPEQKLASWN EDDYTPCSWN GVKCHPRTNR VTELNLDGFS LSGRIGRGLL QLQFLHKLSL
101: SNNNLTGIIN PNMLLSLVNL KVVDLSSNGL SGSLPDEFFR QCGSLRVLSL AKNKLTGKIP VSISSCSSLA ALNLSSNGFS GSMPLGIWSL NTLRSLDLSR
201: NELEGEFPEK IDRLNNLRAL DLSRNRLSGP IPSEIGSCML LKTIDLSENS LSGSLPNTFQ QLSLCYSLNL GKNALEGEVP KWIGEMRSLE TLDLSMNKFS
301: GQVPDSIGNL LALKVLNFSG NGLIGSLPVS TANCINLLAL DLSGNSLTGK LPMWLFQDGS RDVSALKNDN STGGIKKIQV LDLSHNAFSG EIGAGLGDLR
401: DLEGLHLSRN SLTGPIPSTI GELKHLSVLD VSHNQLNGMI PRETGGAVSL EELRLENNLL EGNIPSSIKN CSSLRSLILS HNKLLGSIPP ELAKLTRLEE
501: VDLSFNELAG TLPKQLANLG YLHTFNISHN HLFGELPAGG IFNGLSPSSV SGNPGICGAV VNKSCPAISP KPIVLNPNAT FDPYNGEIVP PGAGHKRILL
601: SISSLIAISA AAAIVVGVIA ITVLNLRVRA STVSRSAVPL TFSGGDDFSR SPTTDSNSGK LVMFSGEPDF STGTHALLNK DCELGRGGFG AVYRTVIRDG
701: YPVAIKKLTV SSLVKSQDEF EREVKKLGKL RHSNLVKLEG YYWTTSLQLL IYEFLSGGSL YKQLHEAPGG NSSLSWNDRF NIILGTAKCL AYLHQSNIIH
801: YNIKSSNVLL DSSGEPKVGD YGLARLLPML DRYVLSSKIQ SALGYMAPEF ACRTVKITEK CDVYGFGVLV LEVVTGKKPV EYMEDDVVVL CDMVREALED
901: GRADECIDPR LQGKFPVEEA VAVIKLGLIC TSQVPSSRPH MGEAVNILRM IRCPSGSSDE LGSS

Arabidopsis Description

IRKProbable LRR receptor-like serine/threonine-protein kinase IRK [Source:UniProtKB/Swiss-Prot;Acc:Q9LY03]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.