Factsheet for GSMUA_Achr9P12540_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P29680_001
GSMUA_Achr6P32490_001
GSMUA_Achr9P04820_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	GSMUA_Achr5P29680_001	AT3G56370.1	15618632
AT5G12900.1	GSMUA_Achr6P32490_001	AT3G56370.1	15618632
AT5G12900.1	GSMUA_Achr9P04820_001	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P03800_001	Banana	nucleus	78.57	79.12
GSMUA_Achr9P20170_001	Banana	cytosol	37.63	64.86
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	64.29	63.4
GSMUA_Achr7P02030_001	Banana	cytosol	69.69	63.19
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	8.36	63.16
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	62.54	56.45
EES14272	Sorghum	plastid	56.27	53.04
CDY67745	Canola	plastid	33.45	52.6
Os08t0508100-01	Rice	plastid	54.53	51.91
VIT_06s0004g01680.t01	Wine grape	cytosol	52.96	51.44
Zm00001d031444_P001	Maize	plastid	53.31	50.83
TraesCS7D01G244400.1	Wheat	plastid	52.44	50.67
TraesCS7A01G245900.1	Wheat	plastid	52.61	50.59
KRH10167	Soybean	nucleus	50.7	50.35
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	52.26	49.83
Os09t0488800-01	Rice	plastid	52.96	49.67
KRH29674	Soybean	cytosol	50.87	49.66
KRH24675	Soybean	nucleus	50.7	49.41
TraesCS7B01G145600.1	Wheat	plastid	51.39	49.25
Zm00001d020937_P001	Maize	plastid	50.17	49.15
EER99087	Sorghum	plastid	50.0	48.64
KRH23169	Soybean	nucleus, plastid	47.39	48.48
HORVU5Hr1G073320.1	Barley	nucleus	43.9	47.82
Solyc01g006690.2.1	Tomato	nucleus	50.35	47.53
PGSC0003DMT400055002	Potato	nucleus	50.35	46.92
Zm00001d006025_P001	Maize	plastid	49.13	46.46
TraesCS5B01G264800.2	Wheat	plastid	50.17	46.3
TraesCS5D01G273100.1	Wheat	plastid	49.48	46.1
PGSC0003DMT400081474	Potato	cytosol	48.26	46.09
TraesCS5A01G265200.2	Wheat	plastid	50.0	45.92
Bra023381.1-P	Field mustard	nucleus	37.28	45.53
CDX85683	Canola	nucleus	37.8	45.49
CDX91157	Canola	nucleus	37.46	45.17
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	42.16	44.49
Bra008872.1-P	Field mustard	plastid	40.07	44.23
CDY53973	Canola	nucleus	41.81	44.2
AT5G12900.1	Thale cress	nucleus, plastid	43.21	44.13
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	49.13	43.93
CDY55867	Canola	cytosol	41.29	43.81
Bra006167.1-P	Field mustard	plastid	38.15	43.28
CDX70481	Canola	cytosol	39.37	41.85
Solyc01g014120.2.1	Tomato	cytosol, nucleus	19.51	32.56
GSMUA_Achr5P18790_001	Banana	mitochondrion	19.16	30.73
Solyc01g014380.2.1	Tomato	nucleus	15.16	28.52
GSMUA_Achr8P19390_001	Banana	plastid	19.16	27.64

Protein Annotations

EnsemblPlants:GSMUA_Achr9P12540_001	EnsemblPlants:GSMUA_Achr9T12540_001	EnsemblPlantsGene:GSMUA_Achr9G12540_001	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3
SEG:seg	UniParc:UPI000295A094	UniProt:M0TZR3	MapMan:35.1	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G12540_001]

Coordinates

chr9:+:8155980..8159052

Molecular Weight (calculated)

64939.7 Da

IEP (calculated)

7.998

GRAVY (calculated)

-0.466

Length

574 amino acids

Sequence
(BLAST)

001: MASSTASSQP HGTQNEDVHA AIAKAVELRS LHAALLQRSN LGSPAVLGPH VGASPSLLRR SNPLSTAEDY PVFAPSYEEE PLRAYHSIHP ENRSLSGTWR
101: AMKPAEGKQD ESVNIVRNEH SSPYSERNIC FTTEHFSKRS SCVNHNLQAS LVADALNSSS SRTSPGYETI ATCNACKPPT INREYEIEHK NLKAVTSIVG
201: SLHDSEPPTH AHTKHRGPIL SWLFPRLKKK PKPEMSPNPV ESEDMAQLLK DWGLLSLESV KKEVFKANKN RDAALAEVSE MRSSLGELQQ KLVNLETYCE
301: ELKKALKQAK HAKNSLVLDR PSLPMRTKFN GSIKDNTMTV SHEVMAEGFL QMVSEARLSV KQFCEMLIHQ IEETDCELME KLKSLLQPHQ MAPPSNKHSK
401: ALLHHVEALI NQSLYQDFEN CVFQKNGSPK FLDPQQDRQE NFSSFISLRN LSWNEVLRKG TKYYSEDFSR FCDQKMSCIV SLLNSSRAWP EQLLHCFFVA
501: AKCIWLLHLL AFSFGPPLMI LRVEENQNFD PLYMEDIPVD RKTAQIPGRV KIMVMPGFYI QDTVLKCRVL CRYQ

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.