Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g048620.2.1 | |
| Solyc06g048950.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G12900.1 | Solyc06g048620.2.1 | AT3G56370.1 | 15618632 |
| AT5G12900.1 | Solyc06g048950.2.1 | AT3G56370.1 | 15618632 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g014120.2.1 | Tomato | cytosol, nucleus | 84.26 | 74.71 |
| PGSC0003DMT400081474 | Potato | cytosol | 91.15 | 46.26 |
| Solyc01g006690.2.1 | Tomato | nucleus | 54.75 | 27.47 |
| VIT_06s0004g01680.t01 | Wine grape | cytosol | 51.15 | 26.4 |
| KRH23169 | Soybean | nucleus, plastid | 44.59 | 24.24 |
| KRH24675 | Soybean | nucleus | 46.56 | 24.11 |
| KRH29674 | Soybean | cytosol | 45.57 | 23.64 |
| KRH10167 | Soybean | nucleus | 44.26 | 23.36 |
| AT5G12900.1 | Thale cress | nucleus, plastid | 30.82 | 16.73 |
| TraesCS7D01G244400.1 | Wheat | plastid | 31.48 | 16.16 |
| CDY53973 | Canola | nucleus | 28.52 | 16.02 |
| TraesCS7A01G245900.1 | Wheat | plastid | 31.15 | 15.91 |
| TraesCS7B01G145600.1 | Wheat | plastid | 31.15 | 15.86 |
| GSMUA_Achr9P27740_001 | Banana | cytosol, nucleus, peroxisome | 30.16 | 15.81 |
| Os08t0508100-01 | Rice | plastid | 31.15 | 15.75 |
| CDY55867 | Canola | cytosol | 27.87 | 15.71 |
| Bra023381.1-P | Field mustard | nucleus | 23.61 | 15.32 |
| GSMUA_Achr9P12540_001 | Banana | nucleus | 28.52 | 15.16 |
| EES14272 | Sorghum | plastid | 30.16 | 15.11 |
| GSMUA_Achr8P25600_001 | Banana | cytosol, nucleus, peroxisome | 31.48 | 15.09 |
| CDX85683 | Canola | nucleus | 23.61 | 15.09 |
| GSMUA_Achr3P03800_001 | Banana | nucleus | 28.2 | 15.09 |
| Os09t0488800-01 | Rice | plastid | 30.16 | 15.03 |
| CDX91157 | Canola | nucleus | 22.62 | 14.5 |
| Zm00001d031444_P001 | Maize | plastid | 28.52 | 14.45 |
| Bra008872.1-P | Field mustard | plastid | 24.59 | 14.42 |
| Zm00001d052889_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 27.87 | 14.12 |
| TraesCS5B01G264800.2 | Wheat | plastid | 28.2 | 13.83 |
| EER99087 | Sorghum | plastid | 26.56 | 13.73 |
| Zm00001d020937_P001 | Maize | plastid | 26.23 | 13.65 |
| TraesCS5D01G273100.1 | Wheat | plastid | 27.54 | 13.64 |
| TraesCS5A01G265200.2 | Wheat | plastid | 27.87 | 13.6 |
| CDX70481 | Canola | cytosol | 23.61 | 13.33 |
| Zm00001d006025_P001 | Maize | plastid | 25.9 | 13.01 |
| GSMUA_Achr7P02030_001 | Banana | cytosol | 26.56 | 12.8 |
| HORVU5Hr1G073290.4 | Barley | cytosol, nucleus, plastid | 26.23 | 12.46 |
| Bra006167.1-P | Field mustard | plastid | 20.66 | 12.45 |
| HORVU7Hr1G050500.2 | Barley | endoplasmic reticulum | 20.98 | 11.76 |
| HORVU5Hr1G073320.1 | Barley | nucleus | 18.69 | 10.82 |
| CDY67745 | Canola | plastid | 12.13 | 10.14 |
| Solyc08g079510.2.1 | Tomato | plastid | 11.15 | 7.19 |
| GSMUA_Achr9P20170_001 | Banana | cytosol | 6.56 | 6.01 |
| Solyc01g014110.2.1 | Tomato | endoplasmic reticulum, extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc01g014380.2.1 | EnsemblPlantsGene:Solyc01g014380.2 | ncoils:Coil | PANTHER:PTHR31029 | PANTHER:PTHR31029:SF3 | SEG:seg |
| UniParc:UPI0002762308 | UniProt:K4AU75 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1:-:12706568..12708960
Molecular Weight (calculated)
33227.4 Da
IEP (calculated)
5.922
GRAVY (calculated)
-0.684
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGASTNFEE NDDDEYNGVI SRQEVQAAIA KAVELRAIHA SLLQGINNNN NSPANFIKCP PHSSSSSSPA ANLFSAQDYP IFTPSYEDAP LPGSKQLHLD
101: DRDYADLWDD NGLGGVTNCD EVSLSNDRKA NSSLRKGISS NMIKSECHNC PTDDQRLVTG SSTGHITLLR NSPGGDYSNS RRSSLGDLRS FSSYNRSCKP
201: AIVSAETDGA SRSGKTSNVI VPLTNSHSLN QLQQKSKGMN LSWLFPKLKK KNKNENSPYR REAEEVSQIC KDHIGVVSVE TLRKELAVAN ESREAALMEV
301: AEMES
101: DRDYADLWDD NGLGGVTNCD EVSLSNDRKA NSSLRKGISS NMIKSECHNC PTDDQRLVTG SSTGHITLLR NSPGGDYSNS RRSSLGDLRS FSSYNRSCKP
201: AIVSAETDGA SRSGKTSNVI VPLTNSHSLN QLQQKSKGMN LSWLFPKLKK KNKNENSPYR REAEEVSQIC KDHIGVVSVE TLRKELAVAN ESREAALMEV
301: AEMES
001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG
Arabidopsis Description
IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.