Factsheet for Os09t0488800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0821900-01
Os03t0335500-01
Os05t0478300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	Os01t0821900-01	AT3G56370.1	15618632
AT5G12900.1	Os03t0335500-01	AT3G56370.1	15618632
AT5G12900.1	Os05t0478300-01	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99087	Sorghum	plastid	67.97	70.51
TraesCS5B01G264800.2	Wheat	plastid	69.77	68.65
Zm00001d020937_P001	Maize	plastid	65.69	68.6
TraesCS5D01G273100.1	Wheat	plastid	68.3	67.86
TraesCS5A01G265200.2	Wheat	plastid	68.95	67.52
HORVU5Hr1G073320.1	Barley	nucleus	58.01	67.36
Zm00001d006025_P001	Maize	plastid	65.52	66.06
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	67.48	64.33
Os08t0508100-01	Rice	plastid	63.24	64.18
GSMUA_Achr9P20170_001	Banana	cytosol	31.21	57.36
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	6.7	53.95
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	51.14	53.78
GSMUA_Achr3P03800_001	Banana	nucleus	49.84	53.51
GSMUA_Achr9P12540_001	Banana	nucleus	49.67	52.96
VIT_06s0004g01680.t01	Wine grape	cytosol	48.69	50.42
CDY67745	Canola	plastid	29.74	49.86
KRH10167	Soybean	nucleus	45.91	48.62
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	50.49	48.58
KRH24675	Soybean	nucleus	45.42	47.2
KRH23169	Soybean	nucleus, plastid	43.14	47.06
KRH29674	Soybean	cytosol	44.93	46.77
CDX85683	Canola	nucleus	36.44	46.75
Bra023381.1-P	Field mustard	nucleus	35.62	46.38
CDX91157	Canola	nucleus	35.78	46.01
Solyc01g006690.2.1	Tomato	nucleus	45.26	45.56
PGSC0003DMT400055002	Potato	nucleus	45.42	45.13
PGSC0003DMT400081474	Potato	cytosol	44.12	44.93
GSMUA_Achr7P02030_001	Banana	cytosol	46.08	44.55
AT5G12900.1	Thale cress	nucleus, plastid	40.36	43.95
CDY53973	Canola	nucleus	37.91	42.73
Bra008872.1-P	Field mustard	plastid	36.27	42.69
Bra006167.1-P	Field mustard	plastid	35.13	42.49
CDY55867	Canola	cytosol	37.42	42.33
CDX70481	Canola	cytosol	36.27	41.11
Solyc01g014120.2.1	Tomato	cytosol, nucleus	18.14	32.27
Solyc01g014380.2.1	Tomato	nucleus	15.03	30.16
Os03t0249100-01	Rice	plasma membrane	19.77	27.19

Protein Annotations

EnsemblPlants:Os09t0488800-01	EnsemblPlantsGene:Os09g0488800	EntrezGene:4347434	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF5
ProteinID:BAT08718.1	RefSeq:XP_015612386.1	SEG:seg	UniParc:UPI0001C7ABC8	UniProt:A0A0P0XPX3	MapMan:35.1

Description

Retrovirus capsid, C-terminal domain containing protein. (Os09t0488800-01)

Coordinates

chr9:-:18852951..18855646

Molecular Weight (calculated)

66521.3 Da

IEP (calculated)

8.253

GRAVY (calculated)

-0.232

Length

612 amino acids

Sequence
(BLAST)

001: MAMAAAAAEA FGTAAATSTP PVQATRQDVQ AAIAKAVELR ALHAALLQRG GGGVGGGASA SRSPAIIRLP PAASPALSRA GAAAAAVATV DEDYPVFTPA
101: YDEEQMAGLS HICQDNRSRS ENWSGIALGG GGSGDDDDDA AFSDYDNLNA FSSSNSELRF PSSTDHHRRH KVHPAFLHSA PSADRFLASA GRATMAGTAE
201: LLKAPSTCGS AFRPATIGRD HGIDVGALKF LASSGAPLSA AAAAAQPRPA KHRRAQILSW LFPRAKKKAK PMSPSAIERE NMSQLLKEWG LLSLDSLRRE
301: LADANAHRDA ALQEAAEMRS SLGELTTKLA GLEAYCSELK KALRLATSST SNAQPSSSSM SRRSTRSIGA SQELPGPVSH EAMVEGFLQI ASEARLSVKQ
401: FCKALIQQVE EPDNGLIEKL NILLQPYQLM ITDNKHCSKL VLYHLEALMN QAMYQDFENC TFQKNGSPRC LDPKQGSQES FASFVALRNL SWNEVLRKGT
501: KYYSEDFSRF CDQKMSCIVS TLKNWSRPWP EQLLQCFFVA AKCVWLLHLL AFSFTPALTI MRVEESRVFD QMYMEDILPD KQQLHNPCQV KIMVMPGFYV
601: QYRVLKCRVL TT

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.