Factsheet for Bra006167.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007241.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	Bra007241.1-P	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67745	Canola	plastid	68.38	94.79
CDX70481	Canola	cytosol	89.72	84.07
Bra008872.1-P	Field mustard	plastid	71.94	70.0
Bra023381.1-P	Field mustard	nucleus	64.62	69.57
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	10.08	67.11
AT5G12900.1	Thale cress	nucleus, plastid	71.54	64.41
GSMUA_Achr9P20170_001	Banana	cytosol	33.2	50.45
VIT_06s0004g01680.t01	Wine grape	cytosol	52.77	45.18
KRH10167	Soybean	nucleus	51.58	45.16
KRH23169	Soybean	nucleus, plastid	49.21	44.38
KRH24675	Soybean	nucleus	51.58	44.31
KRH29674	Soybean	cytosol	50.99	43.88
Solyc01g006690.2.1	Tomato	nucleus	51.38	42.76
PGSC0003DMT400055002	Potato	nucleus	51.58	42.37
GSMUA_Achr3P03800_001	Banana	nucleus	45.06	40.0
PGSC0003DMT400081474	Potato	cytosol	47.04	39.6
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	45.26	39.35
GSMUA_Achr9P12540_001	Banana	nucleus	43.28	38.15
HORVU5Hr1G073320.1	Barley	nucleus	38.54	37.0
Os08t0508100-01	Rice	plastid	43.48	36.48
EES14272	Sorghum	plastid	43.87	36.45
TraesCS7D01G244400.1	Wheat	plastid	41.9	35.69
Zm00001d020937_P001	Maize	plastid	41.3	35.67
TraesCS7A01G245900.1	Wheat	plastid	41.9	35.51
EER99087	Sorghum	plastid	41.3	35.42
TraesCS7B01G145600.1	Wheat	plastid	41.7	35.23
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	44.27	35.22
Zm00001d031444_P001	Maize	plastid	41.9	35.22
Os09t0488800-01	Rice	plastid	42.49	35.13
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	41.7	35.05
Zm00001d006025_P001	Maize	plastid	41.3	34.43
TraesCS5D01G273100.1	Wheat	plastid	40.71	33.44
GSMUA_Achr7P02030_001	Banana	cytosol	41.7	33.33
TraesCS5B01G264800.2	Wheat	plastid	40.91	33.28
TraesCS5A01G265200.2	Wheat	plastid	40.51	32.8
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	34.78	32.35
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	40.32	31.78
Bra016777.1-P	Field mustard	nucleus, plastid	28.46	29.09
Bra019759.1-P	Field mustard	plastid	28.26	28.09
Bra028382.1-P	Field mustard	cytosol	17.39	25.73
Solyc01g014120.2.1	Tomato	cytosol, nucleus	15.61	22.97
Solyc01g014380.2.1	Tomato	nucleus	12.45	20.66

Protein Annotations

EnsemblPlants:Bra006167.1	EnsemblPlants:Bra006167.1-P	EnsemblPlantsGene:Bra006167	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3
SEG:seg	UniParc:UPI000253F9E9	UniProt:M4CPM8	MapMan:35.1	:	:

Description

AT5G12900 (E=4e-125) | unknown protein

Coordinates

chrA03:-:2324378..2326380

Molecular Weight (calculated)

57730.8 Da

IEP (calculated)

7.136

GRAVY (calculated)

-0.623

Length

506 amino acids

Sequence
(BLAST)

001: MQKSSPSSTH SIRIPSSSSA SRPLPNLSAH DYPVFTPSYE DEPASTYYHK NLTLSEHWDE SDVGLVEGDE DLDLRHTYHS DSYKTSASRN TSNPQQDSHH
101: HHQSHVLSYA LRSPPLHSCT SATSNCGSVS SCNEYKQRGF DTMSLNNSNL VVPLTDSHSV AVSSHPRNRG GRGMSWLFPK LKRNPNRTDI SEEVFKDSGS
201: DIEKLKRELM EANRSRDAAL TQVSEMRTSL GEFSEKLQYL ESYCDGLKKA LREAVSRKKN SEMPVSEDVM VEGFLQIVSE SRLSIKQFLK TLVTEIDEED
301: SNLISNINAL LQPHNLSFTS KHSKTIQYHL EAIISQSVQQ DFENCVFQKN GKPKLLDQEQ ERQANFSSFA SLRNLSWSEV LKKGTKYYSE EFSSFCDEKM
401: SFIITTLKWT RPWSEQMLQA FFVAAKCVWL LHLLAFSFKP ALGILRVEEN REFETSYMED MGADRDRQRS LTSRGPAWVK VMVMPGFYVQ DRVLRCKVLC
501: RYKSLG

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.