Factsheet for TraesCS5A01G265200.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G344300.1
TraesCS3B01G376200.1
TraesCS3D01G337800.1
TraesCS4A01G135200.1
TraesCS4B01G169900.1
TraesCS4D01G172000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	TraesCS3A01G344300.1	AT3G56370.1	15618632
AT5G12900.1	TraesCS3B01G376200.1	AT3G56370.1	15618632
AT5G12900.1	TraesCS3D01G337800.1	AT3G56370.1	15618632
AT5G12900.1	TraesCS4A01G135200.1	AT3G56370.1	15618632
AT5G12900.1	TraesCS4B01G169900.1	AT3G56370.1	15618632
AT5G12900.1	TraesCS4D01G172000.1	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G264800.2	Wheat	plastid	96.0	96.46
TraesCS5D01G273100.1	Wheat	plastid	93.12	94.48
HORVU5Hr1G073320.1	Barley	nucleus	77.28	91.65
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	88.8	86.45
EER99087	Sorghum	plastid	66.24	70.17
Zm00001d020937_P001	Maize	plastid	64.8	69.11
Os09t0488800-01	Rice	plastid	67.52	68.95
Zm00001d006025_P001	Maize	plastid	64.32	66.23
TraesCS7A01G245900.1	Wheat	plastid	55.36	57.96
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	7.04	57.89
GSMUA_Achr9P20170_001	Banana	cytosol	30.24	56.76
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	48.64	52.23
GSMUA_Achr3P03800_001	Banana	nucleus	45.6	50.0
GSMUA_Achr9P12540_001	Banana	nucleus	45.92	50.0
CDY67745	Canola	plastid	28.48	48.77
VIT_06s0004g01680.t01	Wine grape	cytosol	45.6	48.22
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	48.0	47.17
KRH10167	Soybean	nucleus	42.88	46.37
KRH24675	Soybean	nucleus	43.36	46.01
KRH29674	Soybean	cytosol	42.88	45.58
KRH23169	Soybean	nucleus, plastid	40.16	44.74
CDX85683	Canola	nucleus	33.92	44.44
Bra023381.1-P	Field mustard	nucleus	33.12	44.04
PGSC0003DMT400081474	Potato	cytosol	42.08	43.76
Solyc01g006690.2.1	Tomato	nucleus	42.56	43.75
CDX91157	Canola	nucleus	33.12	43.49
PGSC0003DMT400055002	Potato	nucleus	42.72	43.34
GSMUA_Achr7P02030_001	Banana	cytosol	42.88	42.34
AT5G12900.1	Thale cress	nucleus, plastid	37.28	41.46
CDY53973	Canola	nucleus	35.84	41.25
Bra008872.1-P	Field mustard	plastid	34.08	40.96
CDY55867	Canola	cytosol	35.2	40.67
Bra006167.1-P	Field mustard	plastid	32.8	40.51
CDX70481	Canola	cytosol	34.4	39.81
Solyc01g014120.2.1	Tomato	cytosol, nucleus	17.6	31.98
TraesCS4A01G080000.2	Wheat	peroxisome, plastid	19.84	28.38
Solyc01g014380.2.1	Tomato	nucleus	13.6	27.87

Protein Annotations

EnsemblPlants:TraesCS5A01G265200.2	EnsemblPlantsGene:TraesCS5A01G265200	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF5	SEG:seg
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:476895509..476897856

Molecular Weight (calculated)

68340.0 Da

IEP (calculated)

8.142

GRAVY (calculated)

-0.384

Length

625 amino acids

Sequence
(BLAST)

001: MAMAAAEGFD HAAPSGVPLP ATRQEVQAAV AKAVELRALH AALRQRAAAP NAGARSSASR SPATIRLPPV VASPARSRTA ATAAADEDYP VFTPTYDEEP
101: MAMAAGLNDI CHDNRSRSEN WGGITLDRGG VGDDEAAYSD YDDCINGFSS CNSDFHYAPS SSENHLRSRG VNRIHPAFLQ SAPLAGRFPA SAGRATCAGE
201: FKMPPSCGGA FRPATIGRDH GLNDAEALGF LGSSSRVPFS SSHQPPPSAH SRAKQRGSQI LSWLFAKGKK KPKLETPPPT TAVIERGNMS QLLKEWGLLS
301: LDSLRKELAE ANAHRDAAQE DAAEMRSSLG ELTTKMMSLE AYCLELKKAL RQATDHSGGA DTQSHSRRSS SRSIGASREL PGNGMPVSHE AMVEGFLQIA
401: SEARLSVKQL CKALIQQVEE PDNGLSDKLN LLLRPHQLAI IAGRHCSKAV LYHLEAVMNQ TLYQDFENPS FQRNGAARHL DPGQGRRESF ASFVALRNLS
501: WSEVLRKGTR YYSEDLSRFC DQKMSCVVAA LSWSWPWPEQ LLQCFFVATK CVWLLHLLAF SFAPPLPILR VDEGRAFDQA YMEDILPDRR QAQDPLRVKV
601: MVMPGFYVQD RVLKCKVLTT KQQDQ

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.