CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH53723
KRH64211

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	KRH53723	AT3G56370.1	15618632
AT5G12900.1	KRH64211	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10167	Soybean	nucleus	93.4	90.66
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	10.34	76.32
KRH24675	Soybean	nucleus	75.22	71.65
KRH29674	Soybean	cytosol	72.19	68.88
VIT_06s0004g01680.t01	Wine grape	cytosol	70.41	66.84
Solyc01g006690.2.1	Tomato	nucleus	64.88	59.87
CDY67745	Canola	plastid	38.68	59.45
PGSC0003DMT400055002	Potato	nucleus	64.71	58.93
PGSC0003DMT400081474	Potato	cytosol	62.92	58.74
GSMUA_Achr9P20170_001	Banana	cytosol	32.8	55.26
Bra023381.1-P	Field mustard	nucleus	44.74	53.4
CDX85683	Canola	nucleus	44.74	52.62
CDX91157	Canola	nucleus	44.38	52.31
Bra008872.1-P	Field mustard	plastid	47.24	50.96
AT5G12900.1	Thale cress	nucleus, plastid	50.8	50.71
CDY53973	Canola	nucleus	48.48	50.09
CDY55867	Canola	cytosol	47.77	49.54
Bra006167.1-P	Field mustard	plastid	44.38	49.21
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	49.38	47.59
GSMUA_Achr9P12540_001	Banana	nucleus	48.48	47.39
GSMUA_Achr3P03800_001	Banana	nucleus	48.13	47.37
CDX70481	Canola	cytosol	45.45	47.22
Os08t0508100-01	Rice	plastid	49.55	46.1
Solyc01g014120.2.1	Tomato	cytosol, nucleus	27.99	45.64
TraesCS7D01G244400.1	Wheat	plastid	47.42	44.78
Solyc01g014380.2.1	Tomato	nucleus	24.24	44.59
TraesCS7A01G245900.1	Wheat	plastid	47.42	44.56
EES14272	Sorghum	plastid	48.13	44.34
TraesCS7B01G145600.1	Wheat	plastid	47.24	44.24
Os09t0488800-01	Rice	plastid	47.06	43.14
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	48.84	43.08
Zm00001d020937_P001	Maize	plastid	44.92	43.0
EER99087	Sorghum	plastid	44.92	42.71
HORVU5Hr1G073320.1	Barley	nucleus	40.11	42.69
Zm00001d031444_P001	Maize	plastid	45.28	42.19
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	45.1	42.03
Zm00001d006025_P001	Maize	plastid	44.21	40.86
TraesCS5B01G264800.2	Wheat	plastid	45.28	40.84
GSMUA_Achr7P02030_001	Banana	cytosol	45.45	40.28
TraesCS5D01G273100.1	Wheat	plastid	44.21	40.26
TraesCS5A01G265200.2	Wheat	plastid	44.74	40.16
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	44.56	38.94
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	36.72	37.87
KRH60459	Soybean	nucleus	26.2	33.33
KRH41761	Soybean	plastid	26.56	30.22

Protein Annotations

EMBL:ACUP02008457	EnsemblPlants:KRH23169	EnsemblPlantsGene:GLYMA_13G342300	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3
ProteinID:KRH23169	ProteinID:KRH23169.1	SEG:seg	UniParc:UPI00023CFCB8	UniProt:I1M533	MapMan:35.1

Description

hypothetical protein

Coordinates

chr13:+:43379317..43381319

Molecular Weight (calculated)

63152.3 Da

IEP (calculated)

7.277

GRAVY (calculated)

-0.564

Length

561 amino acids

Sequence
(BLAST)

001: MAATATNNPQ ITREEIQTAI AKAVELRALH AALTQGSSPG TNNARFPSPS PASHFSAQDY PVFTPSYEDE AHQNSTRSRT ISESCDENGV EGGENSMTPS
101: DYKEKSNSRK GLPFGFGNLD SHMCPADDDT KSVTGSCANH ITVLQTSPAA TANDYFKSRR TNSLGDSKQP LSSCNRCNPA VITSEYENTR NNKSSNIVVP
201: LTDSHASFQT QPRSKGLISW LFPRLKKKHN KNVSSPSRTE SEEVSQVLKD MGIVSVEALK RELMDANESR DAALVEVSEM RSSLGELKQK LEYVESYCEE
301: LKKALRQAIL TRETTFSEKL NSPPQRGTPP FDGNGENLMP VGEDVMVEGF LQIVSESRTD HSLMDNLNLL LQPYKLSLNS KYSKAVLYHF EAFINQSFYQ
401: DFENSVFQKN GCTKFLDPRQ DRQAQFSSFV ALRNLSWSEV LRKGTKYYSE EFSKFCDQKM SCIITTLNWT RPWPEQLLQA FFVAAKCIWL LHLLAFSFNP
501: PLGILRVEEN RSFDPHYMED LVTDRQRSQG PSRVKIVVVP GFYVQDMILR CRVICRHKSA P

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.