Factsheet for GSMUA_Achr9P27740_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P29680_001
GSMUA_Achr6P32490_001
GSMUA_Achr9P04820_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	GSMUA_Achr5P29680_001	AT3G56370.1	15618632
AT5G12900.1	GSMUA_Achr6P32490_001	AT3G56370.1	15618632
AT5G12900.1	GSMUA_Achr9P04820_001	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P20170_001	Banana	cytosol	42.78	74.77
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	77.15	70.6
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	8.76	67.11
GSMUA_Achr3P03800_001	Banana	nucleus	64.09	65.44
GSMUA_Achr9P12540_001	Banana	nucleus	63.4	64.29
EES14272	Sorghum	plastid	61.0	58.29
TraesCS7D01G244400.1	Wheat	plastid	58.76	57.58
TraesCS7A01G245900.1	Wheat	plastid	58.93	57.45
Os08t0508100-01	Rice	plastid	59.45	57.38
GSMUA_Achr7P02030_001	Banana	cytosol	62.03	57.03
TraesCS7B01G145600.1	Wheat	plastid	58.42	56.76
Zm00001d031444_P001	Maize	plastid	57.73	55.81
CDY67745	Canola	plastid	34.19	54.52
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	55.67	53.82
VIT_06s0004g01680.t01	Wine grape	cytosol	53.44	52.62
Zm00001d020937_P001	Maize	plastid	52.23	51.88
EER99087	Sorghum	plastid	52.06	51.36
Os09t0488800-01	Rice	plastid	53.78	51.14
KRH24675	Soybean	nucleus	51.72	51.1
KRH10167	Soybean	nucleus	50.52	50.87
HORVU5Hr1G073320.1	Barley	nucleus	46.05	50.85
KRH29674	Soybean	cytosol	51.2	50.68
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	46.22	49.45
KRH23169	Soybean	nucleus, plastid	47.59	49.38
TraesCS5B01G264800.2	Wheat	plastid	52.58	49.2
PGSC0003DMT400055002	Potato	nucleus	51.55	48.7
TraesCS5A01G265200.2	Wheat	plastid	52.23	48.64
Zm00001d006025_P001	Maize	plastid	50.69	48.6
TraesCS5D01G273100.1	Wheat	plastid	51.37	48.54
Solyc01g006690.2.1	Tomato	nucleus	50.34	48.19
PGSC0003DMT400081474	Potato	cytosol	49.48	47.92
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	51.72	46.88
Bra023381.1-P	Field mustard	nucleus	37.11	45.96
AT5G12900.1	Thale cress	nucleus, plastid	44.16	45.73
CDX85683	Canola	nucleus	37.46	45.7
Bra006167.1-P	Field mustard	plastid	39.35	45.26
CDX91157	Canola	nucleus	36.94	45.17
Bra008872.1-P	Field mustard	plastid	40.03	44.81
CDY53973	Canola	nucleus	41.24	44.2
CDY55867	Canola	cytosol	40.72	43.81
CDX70481	Canola	cytosol	40.21	43.33
Solyc01g014120.2.1	Tomato	cytosol, nucleus	19.24	32.56
GSMUA_Achr5P18790_001	Banana	mitochondrion	18.73	30.45
Solyc01g014380.2.1	Tomato	nucleus	15.81	30.16
GSMUA_Achr8P19390_001	Banana	plastid	18.56	27.14

Protein Annotations

EnsemblPlants:GSMUA_Achr9P27740_001	EnsemblPlants:GSMUA_Achr9T27740_001	EnsemblPlantsGene:GSMUA_Achr9G27740_001	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3
SEG:seg	UniParc:UPI000295013B	UniProt:M0U431	MapMan:35.1	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G27740_001]

Coordinates

chr9:+:31916496..31920735

Molecular Weight (calculated)

65297.1 Da

IEP (calculated)

8.163

GRAVY (calculated)

-0.466

Length

582 amino acids

Sequence
(BLAST)

001: MESSSAGGGA DGIHRQDIQA AIVKAAELRA LHAALLHGGT GGSPAVVRLP AGASPSFSRG ANQLAVPEDY PVFTPSYEED PLPGYHYLRA ENRSLSQTWS
101: AIGLDGEGTD TETVVFDSKS VNKLSTSNSE PNISSVIEHL SNRTSCTNRM PMSQATLGAD ILKSSSRRTG SGECRTGITN EARKRETVNM EVDGDQKNLK
201: NVKSTVAPYN PDQSVKMHTK HRGPVLSWLF PKSKKKPKPE MSPKTMESED MSQLLKEWGV LSLESLKKEL LEANENRDAA LAKVSEMRLS LGELQQKLVS
301: LEAYCEELKT ALKQATHTKS SQSLERSNLS KRMKSIGGNK DNSMPVSQEV MVEGFLQIVS EARLSIKQFC KMIIQQTEET SDDLSEKLNL LLQPHQMTLS
401: SKYSKGVIYH LEALINQSLY QDFENCAFHK NGSPKFLDPR QECRENFSSF VALRNLSWNE VLQKGTKYYS EDFSRFCDQK MSCLVSLLNW SRPWPEQLLQ
501: CFFIAAKCIW LLHLLAFSFS PPLMILRVEE NRDYDPIYME DIPLDRHRAQ APARVKIMVM PGFYVKDRVL RCRVLCRHSS VA

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.