Factsheet for Bra008872.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007241.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	Bra007241.1-P	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53973	Canola	nucleus	93.46	89.5
CDY55867	Canola	cytosol	92.31	88.72
Bra023381.1-P	Field mustard	nucleus	65.38	72.34
Bra006167.1-P	Field mustard	plastid	70.0	71.94
AT5G12900.1	Thale cress	nucleus, plastid	75.58	69.93
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	9.81	67.11
GSMUA_Achr9P20170_001	Banana	cytosol	33.27	51.95
KRH10167	Soybean	nucleus	53.65	48.27
VIT_06s0004g01680.t01	Wine grape	cytosol	54.23	47.72
KRH23169	Soybean	nucleus, plastid	50.96	47.24
KRH24675	Soybean	nucleus	52.69	46.52
KRH29674	Soybean	cytosol	51.73	45.75
PGSC0003DMT400055002	Potato	nucleus	52.5	44.32
Solyc01g006690.2.1	Tomato	nucleus	51.54	44.08
PGSC0003DMT400081474	Potato	cytosol	49.42	42.76
GSMUA_Achr3P03800_001	Banana	nucleus	44.81	40.88
GSMUA_Achr9P12540_001	Banana	nucleus	44.23	40.07
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	44.81	40.03
Os08t0508100-01	Rice	plastid	44.42	38.31
EES14272	Sorghum	plastid	44.62	38.1
HORVU5Hr1G073320.1	Barley	nucleus	38.46	37.95
TraesCS7B01G145600.1	Wheat	plastid	43.46	37.73
TraesCS7D01G244400.1	Wheat	plastid	43.08	37.71
TraesCS7A01G245900.1	Wheat	plastid	43.08	37.52
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	44.62	36.48
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	42.12	36.38
Os09t0488800-01	Rice	plastid	42.69	36.27
Zm00001d031444_P001	Maize	plastid	41.92	36.21
Zm00001d020937_P001	Maize	plastid	40.58	36.01
EER99087	Sorghum	plastid	40.77	35.93
GSMUA_Achr7P02030_001	Banana	cytosol	43.65	35.86
Zm00001d006025_P001	Maize	plastid	40.96	35.09
TraesCS5D01G273100.1	Wheat	plastid	41.15	34.74
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	36.15	34.56
TraesCS5B01G264800.2	Wheat	plastid	41.15	34.41
TraesCS5A01G265200.2	Wheat	plastid	40.96	34.08
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	40.58	32.87
Bra016777.1-P	Field mustard	nucleus, plastid	28.27	29.7
Bra019759.1-P	Field mustard	plastid	27.69	28.29
Solyc01g014120.2.1	Tomato	cytosol, nucleus	18.27	27.62
Bra028382.1-P	Field mustard	cytosol	17.12	26.02
Solyc01g014380.2.1	Tomato	nucleus	14.42	24.59

Protein Annotations

EnsemblPlants:Bra008872.1	EnsemblPlants:Bra008872.1-P	EnsemblPlantsGene:Bra008872	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3
SEG:seg	UniParc:UPI0002543B60	UniProt:M4CXC5	MapMan:35.1	:	:

Description

AT5G12900 (E=1e-187) | unknown protein

Coordinates

chrA10:+:14228164..14230347

Molecular Weight (calculated)

59256.1 Da

IEP (calculated)

8.423

GRAVY (calculated)

-0.579

Length

520 amino acids

Sequence
(BLAST)

001: MRALQAGLMQ KSSPSSTYNS IRIPSSSSPA SRPLPNLSAH DYPVFTPSYE DEPVSAFHHK NLTLSETWDE SGVGLVEGDE EQDLKHTYHS DSYKTSTSRK
101: TLTPQQDSHV YTISVSSCNE YKQRGFDTKS LKSSNLVVPL TDSHSVVVAS QTRNRGGRVM SWLFPKLKRK QKSSNSIFNS PSRTERSEEV SHEVLKDSGS
201: SGVEKLKREL MEANRSRDAA LTQVEEMKSS LGEFNEKLQY LESYCDSLKK ALRQATEVVS QENSNKAVKK TNSEMPVSEE VMVEGFLQIV SESRLSIKQF
301: LKTLVTEIDE EDTTLMSNLN ALLQPYNLSF TSKYSKIIQY HLESIISQTI YQDFENCVFQ KNGKPKLLDP EQERQANFSS FASLRNLSWN EVLKKGTKYY
401: SEEFSSFCDE KMSLIITTLK WTRPWSEQML QAFFVAAKCV WLLHLLAFSF RPALGILRVE ENRVFESSYM EDMGGGDRER MQRSSASRGQ GRVKVMVMPG
501: FYIQDRVLRC KVLCRYKSLG

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.