Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G12900.1 | CDX72142 | AT3G56370.1 | 15618632 |
| AT5G12900.1 | CDY27220 | AT3G56370.1 | 15618632 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53973 | Canola | nucleus | 95.38 | 95.03 |
| Bra008872.1-P | Field mustard | plastid | 88.72 | 92.31 |
| CDY67745 | Canola | plastid | 56.01 | 83.01 |
| CDX85683 | Canola | nucleus | 68.02 | 77.15 |
| CDX91157 | Canola | nucleus | 67.1 | 76.26 |
| AT5G12900.1 | Thale cress | nucleus, plastid | 76.89 | 74.02 |
| CDX70481 | Canola | cytosol | 73.01 | 73.15 |
| Solyc01g014110.2.1 | Tomato | endoplasmic reticulum, extracellular | 9.43 | 67.11 |
| GSMUA_Achr9P20170_001 | Banana | cytosol | 31.42 | 51.05 |
| KRH10167 | Soybean | nucleus | 52.13 | 48.79 |
| VIT_06s0004g01680.t01 | Wine grape | cytosol | 53.23 | 48.73 |
| KRH24675 | Soybean | nucleus | 52.31 | 48.05 |
| KRH23169 | Soybean | nucleus, plastid | 49.54 | 47.77 |
| KRH29674 | Soybean | cytosol | 51.76 | 47.62 |
| CDY19343 | Canola | cytosol | 9.43 | 47.22 |
| PGSC0003DMT400055002 | Potato | nucleus | 52.13 | 45.78 |
| Solyc01g006690.2.1 | Tomato | nucleus | 51.2 | 45.56 |
| PGSC0003DMT400081474 | Potato | cytosol | 48.61 | 43.76 |
| GSMUA_Achr3P03800_001 | Banana | nucleus | 43.99 | 41.75 |
| GSMUA_Achr9P12540_001 | Banana | nucleus | 43.81 | 41.29 |
| GSMUA_Achr9P27740_001 | Banana | cytosol, nucleus, peroxisome | 43.81 | 40.72 |
| Os08t0508100-01 | Rice | plastid | 44.18 | 39.64 |
| EES14272 | Sorghum | plastid | 43.81 | 38.92 |
| TraesCS7D01G244400.1 | Wheat | plastid | 42.51 | 38.72 |
| TraesCS7B01G145600.1 | Wheat | plastid | 42.7 | 38.56 |
| TraesCS7A01G245900.1 | Wheat | plastid | 42.33 | 38.36 |
| HORVU5Hr1G073320.1 | Barley | nucleus | 37.15 | 38.14 |
| Zm00001d052889_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 41.77 | 37.54 |
| Os09t0488800-01 | Rice | plastid | 42.33 | 37.42 |
| Zm00001d031444_P001 | Maize | plastid | 41.59 | 37.38 |
| EER99087 | Sorghum | plastid | 40.67 | 37.29 |
| Zm00001d020937_P001 | Maize | plastid | 40.3 | 37.2 |
| GSMUA_Achr8P25600_001 | Banana | cytosol, nucleus, peroxisome | 43.62 | 37.11 |
| GSMUA_Achr7P02030_001 | Banana | cytosol | 42.7 | 36.49 |
| Zm00001d006025_P001 | Maize | plastid | 40.48 | 36.08 |
| TraesCS5D01G273100.1 | Wheat | plastid | 40.85 | 35.88 |
| TraesCS5B01G264800.2 | Wheat | plastid | 40.85 | 35.53 |
| TraesCS5A01G265200.2 | Wheat | plastid | 40.67 | 35.2 |
| HORVU7Hr1G050500.2 | Barley | endoplasmic reticulum | 34.2 | 34.01 |
| HORVU5Hr1G073290.4 | Barley | cytosol, nucleus, plastid | 40.11 | 33.8 |
| Solyc01g014120.2.1 | Tomato | cytosol, nucleus | 19.59 | 30.81 |
| CDY31261 | Canola | nucleus, plastid | 26.8 | 30.33 |
| CDY21046 | Canola | nucleus, plastid | 24.77 | 30.25 |
| CDX98071 | Canola | nucleus, plastid | 24.58 | 28.73 |
| CDY53856 | Canola | cytosol, plastid | 16.64 | 28.48 |
| Solyc01g014380.2.1 | Tomato | nucleus | 15.71 | 27.87 |
| CDY30072 | Canola | nucleus, plastid | 25.88 | 27.24 |
Protein Annotations
| EnsemblPlants:CDY55867 | EnsemblPlantsGene:GSBRNA2T00017414001 | ncoils:Coil | PANTHER:PTHR31029 | PANTHER:PTHR31029:SF3 | ProteinID:CDY55867 |
| ProteinID:CDY55867.1 | SEG:seg | UniParc:UPI0004EF1F5F | UniProt:A0A078J1J1 | MapMan:35.1 | : |
Description
BnaCnng29490DBnaCnng29490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1J1]
Coordinates
chrLK033434:+:48154..50624
Molecular Weight (calculated)
61416.7 Da
IEP (calculated)
8.589
GRAVY (calculated)
-0.599
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSETKMKG REKEEAIANS VKIRALQAGL MQKSSPSSTY SIRIPSSSSP ASRPLPNLSA HDYPVFTPSY EDEPVSAFHH KNLTLSETWD ESGVGLVEGD
101: EEQDLRHTYH SDSHKTSTSR KTLTPQQDSH VYTISVSSCN EYKQRGFDTK SLKSSNLVVP LTDSHSVVVA SQTRNRGGRV MSWLFPKLKR KQKSSNSIFN
201: SPSRTERSEE VSHEVLKDSG SSGGEKLKRE LMEANRSRDA ALTQVEEMKS SLGEFSEKLQ YLESYCDGLK KALRQATEVV SQENSNKAVK KTNSEMPMSE
301: EVMVEGFLQI VSESRLSIKQ FLKTLVTEID EEDTTLMSNI NTLLQPYNLS FTSKYSKIIQ SHLESIISQT IYQDFENCVF QKNGKPKLLD PEQERQAKFS
401: SFASLRNLSW NEVLKKGTKY YSEEFSSFCD EKMSLIITTL KWTRPWSEEM LQAFFVAAKC VWLLHLLAFS FRPALGILRV EENRVFESSY MEDMGGGDRE
501: RIQRSSASRG QGRVKVMVMP GFYIQDRVLR CKVLCRYKSL G
101: EEQDLRHTYH SDSHKTSTSR KTLTPQQDSH VYTISVSSCN EYKQRGFDTK SLKSSNLVVP LTDSHSVVVA SQTRNRGGRV MSWLFPKLKR KQKSSNSIFN
201: SPSRTERSEE VSHEVLKDSG SSGGEKLKRE LMEANRSRDA ALTQVEEMKS SLGEFSEKLQ YLESYCDGLK KALRQATEVV SQENSNKAVK KTNSEMPMSE
301: EVMVEGFLQI VSESRLSIKQ FLKTLVTEID EEDTTLMSNI NTLLQPYNLS FTSKYSKIIQ SHLESIISQT IYQDFENCVF QKNGKPKLLD PEQERQAKFS
401: SFASLRNLSW NEVLKKGTKY YSEEFSSFCD EKMSLIITTL KWTRPWSEEM LQAFFVAAKC VWLLHLLAFS FRPALGILRV EENRVFESSY MEDMGGGDRE
501: RIQRSSASRG QGRVKVMVMP GFYIQDRVLR CKVLCRYKSL G
001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG
Arabidopsis Description
IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.