CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31261	Canola	nucleus, plastid	87.81	81.38
CDY19343	Canola	cytosol	19.64	80.56
Bra016777.1-P	Field mustard	nucleus, plastid	88.94	79.6
CDX98071	Canola	nucleus, plastid	75.17	71.92
AT1G12330.1	Thale cress	nucleus	78.56	68.91
CDY30072	Canola	nucleus, plastid	77.2	66.54
CDY53856	Canola	cytosol, plastid	36.34	50.95
VIT_02s0241g00060.t01	Wine grape	plastid	51.47	47.9
KRH60459	Soybean	nucleus	45.6	45.8
KRH41761	Soybean	plastid	50.34	45.23
PGSC0003DMT400010099	Potato	plastid	47.63	44.23
Solyc08g079510.2.1	Tomato	plastid	46.28	43.34
TraesCS4D01G224300.1	Wheat	peroxisome, plastid	38.15	38.85
TraesCS4A01G080000.2	Wheat	peroxisome, plastid	37.92	38.44
Zm00001d047916_P001	Maize	plastid	36.57	37.76
TraesCS4B01G224000.1	Wheat	plastid	37.47	37.47
Zm00001d028423_P001	Maize	plastid	35.67	36.74
GSMUA_Achr8P19390_001	Banana	plastid	32.51	36.18
Os03t0249100-01	Rice	plasma membrane	36.12	35.96
KXG39773	Sorghum	cytosol, nucleus, plastid	35.21	35.54
GSMUA_Achr5P18790_001	Banana	mitochondrion	28.67	35.47
CDY67745	Canola	plastid	27.77	33.7
CDX91157	Canola	nucleus	30.47	28.36
CDX85683	Canola	nucleus	30.25	28.09
HORVU4Hr1G063050.1	Barley	mitochondrion	16.03	26.89
CDY53973	Canola	nucleus	30.93	25.23
CDX70481	Canola	cytosol	30.7	25.19
CDY55867	Canola	cytosol	30.25	24.77

Protein Annotations

EnsemblPlants:CDY21046	EnsemblPlantsGene:GSBRNA2T00015211001	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF4	ProteinID:CDY21046
ProteinID:CDY21046.1	SEG:seg	UniParc:UPI0004EEB4D6	UniProt:A0A078G6J0	MapMan:35.1	:

Description

BnaA08g24790DBnaA08g24790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6J0]

Coordinates

chrLK032115:+:456880..458835

Molecular Weight (calculated)

49555.5 Da

IEP (calculated)

8.279

GRAVY (calculated)

-0.538

Length

443 amino acids

Sequence
(BLAST)

001: MAPSSSSSPA KSPVLSLHQA PHFTPIPECE EEDLHEERYK NKATPSSNGG SSATPSRHHK HTLTPLHHNE KPKNKKRHDD NNDEDGGGSV SCNNCRPHHS
101: HREKFSVVPL ETHNNPSFIY SPNLIIKSIF QSLTRKSPKL SSSSSSSAAN ASREEQWRLA AAELSHKLIQ ATKKKEDAVT EASKLKTSMS ELEKKLNKLE
201: STLFQKDGIN DKIIQQFLVS VSESRTSIRA LSRALASQLR TINSFSKSPK SLILYLEAIL SRAFFEDFEA PGFQRTGSTR ILNPIDRCES NYASFNVLAE
301: LTWEEVLSRG TKHFSEEFSQ FCDRKMSDVV SMLCWNRAWP EPLLQAFFGA SKSVWLVHLL ANSVNPGLQI FRVEKDDRFD PVYMEEAGGD RFKDLVRAMV
401: QPGFYVYGSV VKCKVVCKHC GNGEEVVVEN DRSLISVCSP LGG

Best Arabidopsis Sequence Match ( AT1G12330.1 )
(BLAST)

001: MAPSSSSSPS KSPVPSLHQS LHFTPILECE EDDLQEERYK NRATPSSDGG SSATPNHQHH RRTNSNNNHQ HTLTPLHHNG KPQTRKRHDD NDEDDGGAVS
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG

Arabidopsis Description

Cyclin-dependent kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.