CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047916_P001	Maize	plastid	75.4	77.16
Zm00001d028423_P001	Maize	plastid	75.17	76.74
TraesCS4D01G224300.1	Wheat	peroxisome, plastid	72.21	72.87
TraesCS4A01G080000.2	Wheat	peroxisome, plastid	71.75	72.08
TraesCS4B01G224000.1	Wheat	plastid	70.84	70.2
Os03t0249100-01	Rice	plasma membrane	70.84	69.89
HORVU4Hr1G063050.1	Barley	mitochondrion	35.54	59.09
CDY19343	Canola	cytosol	13.21	53.7
GSMUA_Achr8P19390_001	Banana	plastid	39.86	43.97
GSMUA_Achr5P18790_001	Banana	mitochondrion	35.76	43.85
CDY21046	Canola	nucleus, plastid	35.54	35.21
KRH60459	Soybean	nucleus	34.85	34.69
CDX98071	Canola	nucleus, plastid	36.22	34.34
VIT_02s0241g00060.t01	Wine grape	plastid	35.99	33.19
CDY31261	Canola	nucleus, plastid	35.76	32.85
KRH41761	Soybean	plastid	36.45	32.45
Bra019759.1-P	Field mustard	plastid	36.67	31.63
AT1G12330.1	Thale cress	nucleus	35.76	31.09
CDY30072	Canola	nucleus, plastid	35.99	30.74
PGSC0003DMT400010099	Potato	plastid	33.26	30.61
Solyc08g079510.2.1	Tomato	plastid	32.8	30.44
Bra016777.1-P	Field mustard	nucleus, plastid	34.17	30.3
CDY53856	Canola	cytosol, plastid	20.96	29.11
Bra028382.1-P	Field mustard	cytosol	18.45	23.68
EER99087	Sorghum	plastid	27.56	20.51
EES14272	Sorghum	plastid	25.97	18.72

Protein Annotations

EnsemblPlants:KXG39773	EnsemblPlantsGene:SORBI_3001G436500	EntrezGene:8155605	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF4
ProteinID:EES20358.1	ProteinID:KXG39773	ProteinID:KXG39773.1	RefSeq:XP_002489060.1	SEG:seg	UniParc:UPI0001AFF769
UniProt:C6JSA2	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:71468183..71470241

Molecular Weight (calculated)

45910.2 Da

IEP (calculated)

10.126

GRAVY (calculated)

-0.277

Length

439 amino acids

Sequence
(BLAST)

001: MVSSPSPPLP TAASEPKQQQ RGGTKAAPEK ADKKYAHVPT PLHHGHGGAS KKTPRGGKGG GGGDAATDPA AYVAAVSCSD CRFKQRALAP ASPGAVIRSL
101: FVSLTRRSTP RSSPSASGGA GGAGDDGEQW RLAAADLSRR LAAATRTRDE ALEETTRLKH SLAELEHKLA RLESRVLPTP AAAAAFPVDS FLRAVSTARA
201: AVRNLARALS AHLRSPSSPG PSLESFLNRA FHADFELDTD ADVHTPDPAG RCQANLAAYH AIAVLTWEEV LLHGTKHYSD GLSRFCDAKM SEVVSSLGWA
301: RARAWPEPLL QAFFLAAKGV WGVRLLARSV HPPLPVVRAE RGARFDPRFM EDAAASRAGR LEPASVKMMV APGFHVYLAG AGVVKCRVVC FYSSGNGRTG
401: GHRDGGSSAN GSVGLGSSCS DMNGSATDVV DSCKSSRVG

Best Arabidopsis Sequence Match ( AT1G12330.1 )
(BLAST)

001: MAPSSSSSPS KSPVPSLHQS LHFTPILECE EDDLQEERYK NRATPSSDGG SSATPNHQHH RRTNSNNNHQ HTLTPLHHNG KPQTRKRHDD NDEDDGGAVS
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG

Arabidopsis Description

Cyclin-dependent kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.