CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21046	Canola	nucleus, plastid	81.38	87.81
Bra016777.1-P	Field mustard	nucleus, plastid	89.33	86.26
CDY19343	Canola	cytosol	17.78	78.7
AT1G12330.1	Thale cress	nucleus	80.33	76.04
CDX98071	Canola	nucleus, plastid	72.59	74.95
CDY30072	Canola	nucleus, plastid	78.87	73.35
CDY53856	Canola	cytosol, plastid	38.28	57.91
VIT_02s0241g00060.t01	Wine grape	plastid	53.56	53.78
KRH60459	Soybean	nucleus	47.91	51.93
PGSC0003DMT400010099	Potato	plastid	49.79	49.9
Solyc08g079510.2.1	Tomato	plastid	48.74	49.26
KRH41761	Soybean	plastid	50.0	48.48
Zm00001d047916_P001	Maize	plastid	34.52	38.46
TraesCS4D01G224300.1	Wheat	peroxisome, plastid	34.94	38.39
TraesCS4A01G080000.2	Wheat	peroxisome, plastid	34.73	37.99
TraesCS4B01G224000.1	Wheat	plastid	34.73	37.47
GSMUA_Achr8P19390_001	Banana	plastid	30.96	37.19
CDY67745	Canola	plastid	28.24	36.99
GSMUA_Achr5P18790_001	Banana	mitochondrion	27.62	36.87
Os03t0249100-01	Rice	plasma membrane	34.1	36.63
Zm00001d028423_P001	Maize	plastid	32.64	36.28
KXG39773	Sorghum	cytosol, nucleus, plastid	32.85	35.76
CDX91157	Canola	nucleus	30.33	30.46
CDX85683	Canola	nucleus	30.13	30.19
CDY53973	Canola	nucleus	30.96	27.26
HORVU4Hr1G063050.1	Barley	mitochondrion	14.85	26.89
CDX70481	Canola	cytosol	30.33	26.85
CDY55867	Canola	cytosol	30.33	26.8

Protein Annotations

EnsemblPlants:CDY31261	EnsemblPlantsGene:GSBRNA2T00047414001	ncoils:Coil	PANTHER:PTHR31029	PANTHER:PTHR31029:SF4	ProteinID:CDY31261
ProteinID:CDY31261.1	SEG:seg	UniParc:UPI0004EE8A22	UniProt:A0A078H0I0	MapMan:35.1	:

Description

BnaC08g15560DBnaC08g15560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0I0]

Coordinates

chrLK032269:+:309851..312462

Molecular Weight (calculated)

53534.4 Da

IEP (calculated)

8.424

GRAVY (calculated)

-0.448

Length

478 amino acids

Sequence
(BLAST)

001: MAPSSSSSPS KSPVLSLHQA LHFTPIPECE EEDLHEERFK NRATPSSNGG SSATPSRHHK HTLTPLHHNG KPKNKKRHED GGGSVVSCNN CRPHHSHRDK
101: FSVVPLESHN NNTSFIYSPN LIIKSIFQSL TRKSPKLSSS SSSSAADASR EEQWRLAAAE LSHKLIQATK KKEDAVTEAS KLKSSMSELE KKLNKLEVYC
201: HNLKSGLDEC SSNKKQSALF QKDGFNDSII PQFLVSVSES RTSIRALSRA LASQLRTVGG KVYERLSLLL QPFDVKINSF SKSPKSLILY LEAILSRAFF
301: EDFEAPGFQR TGSTRILNPI DRCESNYASF NVLTELTWEE VLSRGTKHFS EEFSQFCDRK MSDVVSMLCW NRAWPEPLLQ AFFGASKSVW LVHLLANSVN
401: PGLQIFRVEK DDRFDLIYME EAGGDRFKDL VRVMVQPGFY VYGSVVKCKV VCKHYSCVEE EVVEDSMSSI SMCSPLGG

Best Arabidopsis Sequence Match ( AT1G12330.1 )
(BLAST)

001: MAPSSSSSPS KSPVPSLHQS LHFTPILECE EDDLQEERYK NRATPSSDGG SSATPNHQHH RRTNSNNNHQ HTLTPLHHNG KPQTRKRHDD NDEDDGGAVS
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG

Arabidopsis Description

Cyclin-dependent kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.