CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72142
CDY27220

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G12900.1	CDX72142	AT3G56370.1	15618632
AT5G12900.1	CDY27220	AT3G56370.1	15618632

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85683	Canola	nucleus	94.54	94.34
CDY67745	Canola	plastid	58.19	75.89
CDY53973	Canola	nucleus	78.36	68.69
CDY55867	Canola	cytosol	76.26	67.1
Solyc01g014110.2.1	Tomato	endoplasmic reticulum, extracellular	10.29	64.47
CDX70481	Canola	cytosol	73.11	64.44
AT5G12900.1	Thale cress	nucleus, plastid	75.42	63.88
GSMUA_Achr9P20170_001	Banana	cytosol	34.45	49.25
CDY19343	Canola	cytosol	10.92	48.15
KRH10167	Soybean	nucleus	55.25	45.5
KRH23169	Soybean	nucleus, plastid	52.31	44.38
VIT_06s0004g01680.t01	Wine grape	cytosol	55.04	44.33
KRH24675	Soybean	nucleus	54.41	43.97
KRH29674	Soybean	cytosol	53.99	43.71
Solyc01g006690.2.1	Tomato	nucleus	53.99	42.27
PGSC0003DMT400055002	Potato	nucleus	54.2	41.88
PGSC0003DMT400081474	Potato	cytosol	51.05	40.43
GSMUA_Achr3P03800_001	Banana	nucleus	46.01	38.42
GSMUA_Achr9P12540_001	Banana	nucleus	45.17	37.46
GSMUA_Achr9P27740_001	Banana	cytosol, nucleus, peroxisome	45.17	36.94
Os08t0508100-01	Rice	plastid	46.22	36.48
TraesCS7D01G244400.1	Wheat	plastid	45.17	36.2
HORVU5Hr1G073320.1	Barley	nucleus	39.71	35.86
TraesCS7A01G245900.1	Wheat	plastid	44.96	35.85
EES14272	Sorghum	plastid	45.8	35.8
Os09t0488800-01	Rice	plastid	46.01	35.78
TraesCS7B01G145600.1	Wheat	plastid	44.96	35.73
Zm00001d020937_P001	Maize	plastid	43.91	35.67
EER99087	Sorghum	plastid	43.91	35.42
GSMUA_Achr8P25600_001	Banana	cytosol, nucleus, peroxisome	45.8	34.28
Zm00001d031444_P001	Maize	plastid	43.28	34.22
Zm00001d006025_P001	Maize	plastid	43.49	34.1
Zm00001d052889_P001	Maize	cytosol, nucleus, peroxisome, plastid	43.07	34.05
TraesCS5D01G273100.1	Wheat	plastid	43.7	33.77
TraesCS5B01G264800.2	Wheat	plastid	43.49	33.28
TraesCS5A01G265200.2	Wheat	plastid	43.49	33.12
GSMUA_Achr7P02030_001	Banana	cytosol	43.28	32.54
HORVU5Hr1G073290.4	Barley	cytosol, nucleus, plastid	43.07	31.93
HORVU7Hr1G050500.2	Barley	endoplasmic reticulum	36.13	31.62
CDY21046	Canola	nucleus, plastid	28.36	30.47
CDY31261	Canola	nucleus, plastid	30.46	30.33
CDY53856	Canola	cytosol, plastid	19.54	29.43
CDX98071	Canola	nucleus, plastid	27.31	28.08
CDY30072	Canola	nucleus, plastid	29.2	27.04
Solyc01g014120.2.1	Tomato	cytosol, nucleus	18.28	25.29
Solyc01g014380.2.1	Tomato	nucleus	14.5	22.62

Protein Annotations

EnsemblPlants:CDX91157	EnsemblPlantsGene:GSBRNA2T00151952001	PANTHER:PTHR31029	PANTHER:PTHR31029:SF3	ProteinID:CDX91157	ProteinID:CDX91157.1
SEG:seg	UniParc:UPI0004EEF2B8	MapMan:35.1	:	:	:

Description

BnaC02g04400D

Coordinates

chrLK031865:+:1090678..1095147

Molecular Weight (calculated)

55106.9 Da

IEP (calculated)

9.261

GRAVY (calculated)

-0.554

Length

476 amino acids

Sequence
(BLAST)

001: MASFETRMNM DREKEEVIAN GVKMRALMQK LSPSIRIPSS SSPASRHLHN LYAHDYPVFT PSYADEPVPA FHRKNLTSSE NLDESCVGGE DQDLRHTLRS
101: QTLHFRSVSS CNDYKQRGFD TKSFKNSNLV VPLTDSHSAA VTSQPRNSGN RVLSWLFPKL KRKKKSDSIF NSPSRTERSE EVPEKLKREL MEANRSRDAA
201: LTQVSEMKSS LREFNEKLQY LESYCDSLKK ALVSREKMPV SEDVMVERFL QIVSESRLSI KQFLKTLVTE IDEDSTLISN INTLLQPYNL SFTSKHSKII
301: QCHLEAIISQ SIYQDFENCV FQKNGKPKFL DQEQDRKAKF SSFASLRNLS WNDVLKKGTK YYSEEFSRFC DEKMNLIITT LKWTRPWSEQ MLQAFFVAAK
401: CVWLLHLLAF SLEPALGILR VEENRVFESS YMEDMGGDRD RQRSTGSCRP VRVKVMVMPG FYVQDRVLRC KVICRY

Best Arabidopsis Sequence Match ( AT5G12900.1 )
(BLAST)

001: MASSETRMNK AREKEEAIAN GVKLRALQAS LMQMKSSPSS NYSLRNPSSS SAASPASRPL PNLSAHDYPV FTPSYEDEPV SAFHHKNLTL SETWDEDGVG
101: LVDGDTYLSD SYKTSTSRKT VMMPHQDSHH HVYTMSDALR SPPLHFYTTG RSNCGSVDFR SVSSCNDYNK QKGFDTKSLK SSNLVVPLTD SHSAVVSSQP
201: RNRGGRVMSW LFPKLKKKQK SNSIFNSPSI TEKSEEVSEV LKDSGSGVEK LKRELMEANR SRDAALTQVS EMKSSLGELS EKLQYLESYC DNLKKALREA
301: TEVVSQENSG GRSSGKKNSE MPVSEEVMVE GFLQIVSEAR LSIKQFLKTL VSEIDEEDST LIGNINTLLQ PHNLSFTSKY SKIIQYHLEA IISQSVYQDF
401: ENCVFQKNGK PKLLDPEQDR QANFSSFASL RNLSWNEVLK KGTKYYSDEF SRFCDEKMSL IITTLNWTRP WSEQMLQAFF VAAKCVWLLH LLAFSFNPAL
501: GILRVEENRE FESSFMEDMG ADRQRSALSR GPARVKVMVM PGFYVLDRVL RCKVLCRYKS LG

Arabidopsis Description

IRKIIRK-interacting protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LXU9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.