CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19343	Canola	cytosol	31.65	92.59
Bra028382.1-P	Field mustard	cytosol	83.86	77.49
CDY30072	Canola	nucleus, plastid	62.34	38.33
CDY31261	Canola	nucleus, plastid	57.91	38.28
AT1G12330.1	Thale cress	nucleus	59.81	37.43
CDX98071	Canola	nucleus, plastid	54.11	36.93
CDY21046	Canola	nucleus, plastid	50.95	36.34
KRH60459	Soybean	nucleus	45.25	32.43
VIT_02s0241g00060.t01	Wine grape	plastid	45.89	30.46
KRH41761	Soybean	plastid	44.62	28.6
Solyc08g079510.2.1	Tomato	plastid	41.77	27.91
PGSC0003DMT400010099	Potato	plastid	42.09	27.88
GSMUA_Achr5P18790_001	Banana	mitochondrion	28.48	25.14
CDY67745	Canola	plastid	28.8	24.93
GSMUA_Achr8P19390_001	Banana	plastid	29.43	23.37
TraesCS4D01G224300.1	Wheat	peroxisome, plastid	29.11	21.15
Os03t0249100-01	Rice	plasma membrane	29.75	21.12
TraesCS4A01G080000.2	Wheat	peroxisome, plastid	29.11	21.05
KXG39773	Sorghum	cytosol, nucleus, plastid	29.11	20.96
TraesCS4B01G224000.1	Wheat	plastid	29.11	20.77
Zm00001d047916_P001	Maize	plastid	28.16	20.75
Zm00001d028423_P001	Maize	plastid	28.16	20.7
CDX91157	Canola	nucleus	29.43	19.54
CDX85683	Canola	nucleus	29.43	19.5
CDY53973	Canola	nucleus	29.11	16.94
CDY55867	Canola	cytosol	28.48	16.64
CDX70481	Canola	cytosol	28.16	16.48
HORVU4Hr1G063050.1	Barley	mitochondrion	9.49	11.36

Protein Annotations

EnsemblPlants:CDY53856	EnsemblPlantsGene:GSBRNA2T00011557001	PANTHER:PTHR31029	PANTHER:PTHR31029:SF4	ProteinID:CDY53856	ProteinID:CDY53856.1
SEG:seg	UniParc:UPI0004EF483B	UniProt:A0A078IV87	MapMan:35.1	:	:

Description

BnaA02g36310DBnaA02g36310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV87]

Coordinates

chrLK033244:-:7544..8796

Molecular Weight (calculated)

36068.8 Da

IEP (calculated)

7.677

GRAVY (calculated)

-0.491

Length

316 amino acids

Sequence
(BLAST)

001: MTPTTNTEEQ SLATSVKPQT LFRRGLPPPP PPSQTLPEKS SGAREEAQQA RDLLPQPQIG PRRVQQQQQE TECPCSVQRW DHPAIPRLGV RISLFDQSPE
101: QSFRVADSQL RTIGGKVYER LSLLPQPFDV KINSFAKNPK SLIFYLEAIL SRAFFENFEL RSFRVSENGS TRILNPSDRC ESNYALFNVL VELTWDEVLS
201: RGTKHFSEEF SRFCDRKNEC HVASMLCWNR AWPEPLLQAF FGASKSVWLD HLLANSLNPG LQIFCVERDD RFDPVYKEET GGDQYKSVVR AMVQPGFYVY
301: GSVVKCKVVF KHCGSD

Best Arabidopsis Sequence Match ( AT1G12330.1 )
(BLAST)

001: MAPSSSSSPS KSPVPSLHQS LHFTPILECE EDDLQEERYK NRATPSSDGG SSATPNHQHH RRTNSNNNHQ HTLTPLHHNG KPQTRKRHDD NDEDDGGAVS
101: CNKCRPHHSH RDKFSVVPLE SHNNPSFISS PNLIIKSIFQ SLTRRSPKPS SATAALPPRS SSSSAADASR EEQWRLAVAE LSHKLIQATK KKEDAVIEAS
201: RLKSSMAELE KKLNKLEIYC HNLKSGLDEC SNKKQSVPIR KDGFNDRIIQ QFLVSVSESR SSIRALSRSL ASQLRTVGGK VYERLSLLLQ PFDVKINSFA
301: KNPKSLIFYL EAILSRAFFE DFEAPGFQKN GSTRILNPID RCESNYASFN VLMELTWDEV LSRGTKHFSE EFSRFCDRKM SDVVSMLSWN RAWPEPLLQA
401: FFGASKSVWL VHLLANSVNP GLQIFRVEKD DRFDPIYMEE TGGERFKSLV RAMVQPGFYV YGSVVKCKVV CKQCGSDEEE LEDHTVKECN KNDKSLISIC
501: SPLGG

Arabidopsis Description

Cyclin-dependent kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.